AT1G78730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.942 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G69630.1); Has 1701 Blast hits to 1666 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29607840..29609441 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48282.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.74 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEDAESRVS STRSYDRRGH LDWLRKLPDS LLCQVFLNLP TKDVVKTSVL SSTWGNIWRS VPGLDLGYGD FPEYNAFVSF VDSFLGFNSE SRLQNFKLNY 101: QYLRLKYEWK WTELDNANVT RWINTVIKRK VEHLHLSDVT FSNPESVSLP CVKVMYLDMV KFANDLAFEM LISGCPVLES LTIKRSACDN VDYLRVCSQS 201: LLSFTLVGHC NEDMVKEQVV AIDAPRLEDL KLYCHETASF IIKNPASLVK MDIDIMFNLS SEQKFDPNDL PKRNMIRNFL LGISGVKEME ISSHTLEVIY 301: NYSRCERLPV FRNLSSLHAD FDDYRWEMLP GFSKTPGEEP ISILPGPQCN LPALEFVDIL KPMVEKETEL KLMSYFLEKS TILKKLTLRL GDFRGNEESA 401: LLKKLLTIPR LSSSCQVVVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)