AT1G73570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.794 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HCP-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 17442 Blast hits to 7119 proteins in 1241 species: Archae - 0; Bacteria - 12464; Metazoa - 575; Fungi - 642; Plants - 369; Viruses - 21; Other Eukaryotes - 3371 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27650992..27653942 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67764.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 604 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVSGQSIIA ISLFTLSLYI HRVQARPFVL VLSNEDLNGG FNDNGAYESS DFDEFGESEP KSEEELDPGS WRRIFETNES TVHASASPQY YSGLHKILSA 101: ASEGNTTLME EAVSEIDSSA SSGDPHAQSV MGFVYGIGMM RETSRSKSIL HHHFAAAGGN MQSKMALAFR YLRQNMYDKA VELYAELAET AVNSFLISKD 201: SPMAEPVRIH IGTEENKDAL RKSRGEEDED FQILEYQAEK GNSVAMHKIG LFYYFGLRGL RRDHAKALYW FSKAEFNGLG YLYVKGYGVD KRNYTKAREY 301: FEMAANNEDP SGHYNLGVLY LKGTGVKKDV RHATKYFFVA ANAGQPKAFY QLAKMFHTGV GLTKNLEMAT TFYKLVAERG PWSSLSRWAL EAYLKGDVGK 401: AFILYSRMSE LGYEVAQSNA AWIVDKYGER SMCMGVYGFC TDKERHDRAH SLWWRASEQG NEHAALLIGD AYYYGRGTER DFVRAAEAYM YAKSQSNAQA 501: MFNLGYMHEH GEGLPFDLHL AKRYYDQALQ SDTAAKLPVT LALASVWVRR NYADTALVQV LNSLPEVHQK VVEWVENGML EEVVLDPVGA NVAQPLAAPV 601: AFPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)