AT1G77060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phosphoenolpyruvate carboxylase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G21440.1); Has 8811 Blast hits to 8811 proteins in 1498 species: Archae - 116; Bacteria - 4944; Metazoa - 32; Fungi - 514; Plants - 174; Viruses - 0; Other Eukaryotes - 3031 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28951804..28953449 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36567.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 339 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMLMAVKTT SLCCSSLNLT ASPTFRRNPR AARLVNPTAR IQTRFHRLIE EQGIVLMPGC YDALSAAIVQ QTGFSAGFIS GYALSASLLG KPDFGLLTPP 101: EMAATARSVC ASAPNIPIIA DADTGGGNAL NIQRTVKDLI AAGAAGCFLE DQAWPKKCGH MRGKQVIPAE EHAAKIASAR DAIGDSDFFL VARTDVRATS 201: AKSGLEDAIA RVNLYMEAGA DASFVEAPRD DDELKEIGKR TKGYRVCNMI EGGVTPLHTP DELKEMGFHL IVHPLTALYA STRALVDVLK TLKENGSTRD 301: HLQKMATFEE FNSLVDLDSW FELEARYSNL RNALGTTKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)