AT1G69935.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : short hypocotyl in white light1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SHORT HYPOCOTYL IN WHITE LIGHT1 (SHW1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33780.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26342072..26343082 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21368.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||
| Length | 192 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAATTTLSS SSSSPSLTLI NASHRFVSVT PFSSNSIFLR RRFRRLNRSL ASSSSHSRRR YESDDRFFGG GDNYDVVPDD DGFSDDDDEE DERESSVDLL 101: IRFLRSMFKK VSKRTKKASR RILPAAMSPR LVSFAVDGIL LLGSLSITRA FLEVICNLGG TVFTVILLIR LFWAAASFFQ TYGNSFGPNP VN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)