AT3G57190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : peptide chain release factor, putative | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
peptide chain release factor, putative; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescent 109 (TAIR:AT5G36170.2); Has 13500 Blast hits to 13496 proteins in 2706 species: Archae - 0; Bacteria - 9313; Metazoa - 113; Fungi - 108; Plants - 181; Viruses - 0; Other Eukaryotes - 3785 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21166468..21168198 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45971.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 406 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAKIIGGCC SWRRFYRKRT SSRFLIFSVR ASSSMDDMDT VYKQLGLFSL KKKIKDVVLK AEMFAPDALE LEEEQWIKQE ETMRYFDLWD DPAKSDEILL 101: KLADRAKAVD SLKDLKYKAE EAKLIIQLGE MDAIDYSLFE QAYDSSLDVS RSLHHYEMSK LLRDQYDAEG ACMIIKSGSP GAKSQIWTEQ VVSMYIKWAE 201: RLGQNARVAE KCSLLSNKSG VSSATIEFEF EFAYGYLLGE RGVHRLIISS TSNEECSATV DIIPLFLRAS PDFEVKEGDL IVSYPAKEDH KIAENMVCIH 301: HIPSGVTLQS SGERNRFANR IKALNRLKAK LLVIAKEQKV SDVNKIDSKN ILEPREETRS YVSKGHKMVV DRKTGLEILD LKSVLDGNIG PLLGAHISMR 401: RSIDAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)