AT1G57980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.723 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-sugar transporter family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 17 (TAIR:AT1G57943.1); Has 334 Blast hits to 326 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 328; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21439444..21440732 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44831.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEMTEASKHT TTHEESEHVQ NPEPDQVLSQ RQLLQLNQKK WWISVLICLF LVLLGDSLVI LLLNFFYVQD RREDNNQDLQ YKGTWMQALI QNAAFPILIP 101: LFFIFPSPKP NPETINTRFL SIRLILLYFS LGVLVAAHSK LYALGKLYSS YGFFMLISGS QLIFTLIFTA IINRFKFTRW IIISIVLILV SYAFGGPVFS 201: GEPDENEHFY GIQAWLTFAA SVAFALSLCL VQLSFEKLLV KTKRYGNKKV FRMVLEMQIC VSSVASVVCL VGLFASGEYK ELKGDSERFK KGETYYVLSL 301: VGLALSWQVW AVGLIGLVLY VSSVFSNIVH MCASPLMAFI VVLAFDFIDD DFSWPRIGAL IGSVLALGSY FYTLHKRNKK KMVEFNQSEN NVEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)