AT1G55240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.946 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF716) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF716) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 435 Blast hits to 434 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20605015..20606185 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35028.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.33 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.33 | ||||||||||||||||||||||||||||
| Length | 311 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSFLGHVLP GFAFVALGLW HLFNNIKLFC LHPNTFSSST WFPISKLRHL ELYLIMLSST ASISMELFIG PRRHHPFDVD GTIPSNHLHN FEHSSISMSF 101: LVYAVLALVL DRARPRAAAS EGLTMLAAAA AFSQQLLLFH FHSTDHMGVE GQYHVILQVV IFVSLLTTIM GIFLPKSFLV SLVRSSSIAF QGVWLIVIGC 201: MLYTPSLIPK GCYIHDEGRH IIVKCSTEEA LHRAKSLVNL EFSWLFVTNT LFVVTLYLIL DRVYGENVEY SSLTTNNQTY QDDEEQHFES KSTQKTSFVQ 301: MGKLVGHGQK M |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)