AT1G44960.1::SUBA5

AT1G44960.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plasma membrane 0.907
What is SUBAcon?

Predictors

External Curations

AmiGO : plasma membrane 17644812
TAIR : plasma membrane 17644812

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:17644812 (2007): plasma membrane	PMID:24833385 (2014): AT4G14455.1:None: PMID:24833385 (2014): AT2G22425.1:None: PMID:24833385 (2014): AT2G27290.1:None: PMID:24833385 (2014): AT1G14700.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT1G63120.1:None: PMID:24833385 (2014): AT1G51930.1:None: PMID:24833385 (2014): AT5G49760.1:None: PMID:24833385 (2014): AT4G20790.1:None: PMID:24833385 (2014): AT1G29060.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT5G47180.1:None: PMID:24833385 (2014): AT4G25360.1:None: PMID:24833385 (2014): AT1G69880.1:None: PMID:24833385 (2014): AT1G59730.1:None: PMID:24833385 (2014): AT3G28220.1:None: PMID:24833385 (2014): AT5G11680.1:None: PMID:24833385 (2014): AT3G52070.1:None: PMID:24833385 (2014): AT1G27290.1:None: PMID:24833385 (2014): AT1G47640.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT2G36305.1:None: PMID:24833385 (2014): AT1G45145.1:None: PMID:24833385 (2014): AT5G42980.1:None: PMID:24833385 (2014): AT4G37370.1:None: PMID:24833385 (2014): AT5G52240.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT1G31812.1:None: PMID:24833385 (2014): AT1G57870.1:None: PMID:24833385 (2014): AT4G38690.1:None: PMID:24833385 (2014): AT2G31280.1:None: PMID:24833385 (2014): AT3G21580.1:None: PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT4G01410.1:None: PMID:24833385 (2014): AT2G24940.1:None: PMID:24833385 (2014): AT1G34640.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT4G14950.1 endoplasmic reticulum [5.65]
AT2G36300.1 endoplasmic reticulum [5.12]
AT1G04070.1 mitochondrion [4.88]
AT1G71780.1 endoplasmic reticulum [4.86]
AT3G12180.1 endoplasmic reticulum [4.67]
AT5G06660.1 vacuole [4.65]
AT4G01320.1 endoplasmic reticulum [4.63]
AT3G60800.1 golgi [4.55]
AT5G27210.1 plasma membrane [4.53]
AT5G12190.1 nucleus [4.45]

AT5G42980.1 cytosol
AT1G31812.1 cytosol
AT1G45145.1 cytosol
AT2G24940.1 cytosol
AT3G17000.1 endoplasmic reticulum
AT5G52240.1 endoplasmic reticulum
AT5G47180.1 endoplasmic reticulum
AT4G37370.1 endoplasmic reticulum
AT4G25360.1 endoplasmic reticulum
AT3G12180.1 endoplasmic reticulum
AT2G36305.1 endoplasmic reticulum
AT2G22425.1 endoplasmic reticulum
AT1G27290.1 endoplasmic reticulum
AT1G47640.1 endoplasmic reticulum
AT1G69880.1 endoplasmic reticulum
AT1G34640.1 extracellular
AT1G14700.1 extracellular
AT1G51930.1 endoplasmic reticulum, extracellular
AT4G14455.1 golgi
AT1G17280.1 golgi
AT1G29060.1 golgi
AT4G37680.1 golgi
AT4G30850.1 golgi
AT3G66654.1 golgi
AT1G59730.1 golgi
AT1G57870.1 nucleus
AT2G31280.1 nucleus
AT2G26180.1 nucleus
AT4G01410.1 plasma membrane
AT4G20790.1 plasma membrane
AT4G38690.1 plasma membrane
AT5G06320.1 plasma membrane
AT5G11680.1 plasma membrane
AT5G49760.1 plasma membrane
AT1G63120.1 plasma membrane
AT3G52070.1 plastid
AT3G21580.1 plastid
AT2G27290.1 plastid
AT3G28220.1 vacuole
AT5G49540.1 vacuole

Description (TAIR10)

protein_coding : SNARE associated Golgi protein family

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); Has 1433 Blast hits to 1432 proteins in 513 species: Archae - 4; Bacteria - 1059; Metazoa - 2; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).

Protein Annotations

eggNOG:COG0398	eggNOG:KOG3140	EMBL:AC020576	EMBL:AY072180
EMBL:AY133760	EMBL:CP002684	EnsemblPlants:AT1G44960	EnsemblPlants:AT1G44960.1
entrez:841061	GeneID:841061	GO:GO:0005886	GO:GO:0016021
Gramene:AT1G44960.1	hmmpanther:PTHR12677	hmmpanther:PTHR12677:SF2	InterPro:IPR015414
InterPro:IPR032816	KEGG:ath:AT1G44960	OMA:RLGIWAI	PANTHER:PTHR12677
Pfam:PF09335	Proteomes:UP000006548	RefSeq:NP_175116.2	STRING:3702.AT1G44960.1
TAIR:AT1G44960	TMHMM:TMhelix	UniGene:At.38763	UniProt:Q9LPD5

Coordinates (TAIR10)

chr1:+:16999576..17001447

Molecular Weight (calculated)

28224.30 Da

IEP (calculated)

10.06

GRAVY (calculated)

0.43

Length

261 amino acids

Sequence (TAIR10)
(BLAST)

001: MKKWLAIAAT VAIIAIIVRQ GTTQYGWNKE AALEKLKEWS DRLGIWAIPT YVAVHTITLA LCLPHAVFFE AGASMLFGFL PALLCVFSAK VLAASFSFWI
101: GRFVFKSSTR ATGWAHSNKY FNILSRGVER DGWKFVLLAR FSPIPSYVIN YALAATEVRF VADFLFPTVI GCLPMILQNA SVGSLAGMAV ASVAGKQKSQ
201: VWGYVFPVLG ILSSVLISLR IKKYSAGITE ASSDTSANNS SLASSETANP AYGTDGSKKS E