AT1G51930.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.394 endoplasmic reticulum 0.332 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41450.1); Has 8601 Blast hits to 8582 proteins in 272 species: Archae - 0; Bacteria - 0; Metazoa - 2188; Fungi - 755; Plants - 4482; Viruses - 20; Other Eukaryotes - 1156 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:19294838..19295236 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 14934.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 132 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDTIDEILIG FSIIGLIVIV IANCCDNIDP PPTRLPPETI HQTVQPQQDI ETGQSKALVF KDIKEEEGGR EEEGGGKRFC PICLEEYEDD HQIRRLRNCG 101: HVFHLLCIDS WLTQKQNCPS CRRSVDLMSL GL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)