AT1G42470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Patched family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT4G38350.1); Has 2676 Blast hits to 2177 proteins in 377 species: Archae - 64; Bacteria - 237; Metazoa - 1621; Fungi - 207; Plants - 110; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:15926987..15935128 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 140094.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1272 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQILFVGYGV EAKQSAGYCA MYDICGARSD GKVLNCPFNI PSVKPDDLLS SKIQSLCPTI TGNVCCTETQ FDTLRSQVQQ AIPFIVGCPA CLRNFLNLFC 0101: ELTCSPDQSL FINVTSTTKV KNNSTVDGIQ YYITDDFGAG MYESCKNVKF GSSNSRALDF LGAGAKNFKE WFTFIGQKAG VNLPGSPYGI AFLPTPPVSS 0201: GMRPMNVSIY SCGDESLGCS CGDCPSAATC SSKAEVPTQK KHSCSIKIGS LEVKCVDFIL AILYIVLVSL FLGGGLLHPV RGKKKTSQMG TLSEASGERN 0301: SVNQQKPDTI QSQMLQNTPQ RNWGQLSTVQ GHLANFYGKY GIWVARHPTL VLCLSVSVVL LLCVGLIRFK VETRPDKLWV GSGSRAAEEK QFFDTHLAPF 0401: YRIEQLIIAT VQTSSHEKAP EILTDDNIKL LFDIQKKVDG LRANHSGSMV SLTDICMKPL GEDCATQSVL QQYFKMKPEN YDDYGGVDHV KYCFEHFTST 0501: ESCLSAFKGP LDPTTALGGF SGNSFSEASA FLVTYPVDNF VDNKGNKTEK AVAWEKAFIQ LAKDELLPMV QAKNLTLSFS SESSIEEELK RESTADVITI 0601: AISYLVMFAY ISLTLGDSPR LKSFYITSKV LLGLSGVLLV MLSVLGSVGF FSAVGMKSTL IIMEVIPFLV LAVGVDNMCI LVHAVKRQEQ ELPLERRISN 0701: ALMEVGPSIT LASLAEILAF AVGAFIKMPA VRVFSMFAAL AVLLDFLLQI TAFVALIVFD FRRTEDKRVD CFPCIKTSKS SISAEKGVGQ RKAGLLTRYM 0801: KEVHAPVLSH WIVKIVVIAF FFGLAMAGIA LSTRIEPGLE QQIVLPQDSY LQGYFNNIST YLRIGPPLYF VLKNYNYSSE SRHTNQLCSI NKCNPNSLLN 0901: EIARASLTPE LSYIAKPAAS WLDDFLVWLS PEAFGCCRKF TNGTFCPPDD QPPCCPPGQT SCGLSEVCKD CTTCFRHADL SSDRPSTTQF KEKLPWFLNA 1001: LPSADCAKGG HGAYSSSVDL QGYANGIIQA SSFRTYHTPL NKQVDFVNSM RAAQEFSAKV SRSLKMEIYP YSVFYMFFEQ YLDIWKTALI NLSIAIAAVF 1101: VVCLIITCSF WSSAIILLVI AMIIIDLLGV MAVFHIQLNA LSVVNLIMSV GIAVEFCVHI THAFSHWGQK PSDERGVGWD GSFSFQWNYI DETSWGDCAR 1201: FLKIRSLCGV LLQDVFGTSP SRFLTRPCIF TGVLEHVWSS SKTCRRGKAR SSTFGFISTL GELVFLFCRF CL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)