AT5G51200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3414) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3414); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3414 (InterPro:IPR021827); Has 203 Blast hits to 190 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 18; Plants - 55; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20804926..20819408 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 206741.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.23 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1838 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVSPKDLVAI VHSSLLGTSR PTPTQRIELT HAIRNSFPSL QNLLSFPPPK PSDRAQVQSK EIRLPDSLPI SLDDQDIAIS LKLSDELHLN EIDSVRLLVS 0101: SNQEWGLMGR DPLEIQRLAT GLWYTGRRDL TSTLYTLLRA VVLDEGLEPD LIADIQGLLE ELIEAGLRQR LITLIKELNR EDPTGLGGPL CERYLIDSRG 0201: ALVERRAVVQ RERLILGHCL VLSILVDRPG SKDVKDIYYI LKDNAAQLTE GNDTISSQIT FSLLFSLIIT FVSDAISRLS DKSSMISQDA SFRTDFQDIV 0301: MASGSDPTAD GFIGGIRLAW AVHLMLIHDG ISGMDTISTA STTDMGHICS CLESIFSKNV FQFLLDNVLR TAAYQNDEED IIYIYNAYLH KLASCFLSHP 0401: IARDKVKESK DMAMSVLNSY RTSDPLDGSM QTEESDRPLP FISLMEFKEP ELLSGNDVLW TFVNFAGEDH TNFKTLVAFL EMLCTLASTQ EGASKVYELL 0501: RGTSFRSIGW PTLFDCIRIY DEKFKQSLQT AGAMMPEFLE GDAKALVAYL NVLQKVVENG NPTERKNWFP DIEPFFKLLG YENIPPYLKG ALRKTIAAFV 0601: NVFPEMRDSI WAFLEQYDLP VVVGSQVGKS DQSSQVYDMQ FELNEVEARR EQYPSTISFL NLINALIAGE KDVNDRGRRA YSDPCEKWQL VVACLQHFHM 0701: ILSMYDIQEE DLDGFTEHPH FLVSLETSSL QTQLPIIELL KDFMSGKALY RNLMGILQVG VNSIISERLS KTYGKILEKA VQLSLEILLL VFEKDLLVSD 0801: VWRPLYQPLD IILSQDHNQI IALLEYVRYD SLPQIQRSSI KIMNILRCSR LVGLVPMLIK IDAANSLIED YAACLEGRLE EGEVVENSCD DLGVLIMQLL 0901: VDNINRPAPS ITHLLLKFDL DAPVEGTVLQ PKFHYSCLKV ILEMLEKLPN PDINFLLFEF GFQLLCELNL DPLTSGPTMD LLSSKKYQFF LQHLDTIGVA 1001: TLPKRSGSQA LRISSLHQRA WLLKLLAIAL HTGSGSSSAH LEACQSILSH LFGREVTEAA NEPFSSSTYP QDGLDYAGTS SISKSKALAL LEILQFRSPD 1101: ASMQLPQIVS SLKYDSLVED ILGNRDTSVS GSIYYYSERG DRLIDLSSFS NKLWQKLHSG FPLVDSFPNV AELSEVRETI QQLLKWGWKY NRNLEEQAAQ 1201: LHMLAGWSQI VEVSACRRIS SLDNRSEILY RILDASLSAS ASPDCSLKMA FVLTQVALTC IAKLRDDRFS FQGALSSDTV TCLDVMMVKH LSTGACHSVL 1301: FKLVMAILRH ESSESLRRRQ YALLLSYFQY CQHMIALDVP TSVVQFLLLN EQDGEDLDIQ KIDKEQADLA RANFFIIKKE AQGILDLVIK DASQGSEFGK 1401: TISLYVLEAL VCIDHERYFL SQLQSRGFIR SCLGSISNIS YQDGTHLLES QQRACTLEAE LALLLRISHK YGKSGGQVLF SMGALEHIAS CRAISFKGNM 1501: RRVDMKLQSD VGYNVQKQRT IITAVLRLVF ALTSLVETSE FFEGRNKIVR DVVEFIKGHQ SLFDQLLRED FTQADDLLME QIILAVGILS KVWPFEENDG 1601: YGFVQGLFDM MSKLFIASPI KSILSQGSEL KLSQLRFSLT SYLYFLVTKN SLRLQVSDDS LDSSTKLRQP TLLLLASLLS HVTDSLERAA EKKSLLLHKI 1701: RDINELSRQD VDAIIKICDS QEYVTPSDNI HKRRYIAMVE MCQIVGNRDQ LITLLLQLAE HVLNIILIHL QDRSVSSNER GSYGSKSHIQ QEVTDLCGKL 1801: SPTIDRLALL NEGKVGHNLK VFQRLATTVK EMAIQKCV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)