AT1G26250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G08370.1); Has 289174 Blast hits to 44674 proteins in 1767 species: Archae - 806; Bacteria - 48932; Metazoa - 103337; Fungi - 38580; Plants - 50919; Viruses - 7655; Other Eukaryotes - 38945 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9083903..9085234 | ||||||||||||||||||||
| Molecular Weight (calculated) | 49337.30 Da | ||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||
| Length | 443 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASPNWPSLL MVVLALYSMV AYTSAQYSPT PTPYSPLPPY VYNSPPPYVY NSPSPPPYVY KPPPYIYSSP PPPPYVYSSP PPPPYVYNSP PPPPYVYSSP 101: PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSPP PPPPYVYQSP PPPPYVYSSP PPPPYVYKSP 201: PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYSSP 301: PPPPYVYSSP PPPPYVYKSP PPPPYVYTSP PPPPYVYKSP PPPPYVDSYS PPPAPYVYKP PPYVYKPPPY VYNYSPPPAP YVYKPPPYVY SYSPPPAPYV 401: YKPPPYVYSY SPPPAPYVYK PPPYVYSSPS PPPYYSSPSP PLY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)