AT1G19025.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.885 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA repair metallo-beta-lactamase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1); Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34; Bacteria - 280; Metazoa - 259; Fungi - 220; Plants - 166; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6568920..6570800 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62147.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.49 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||
| Length | 549 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIEMPRGLP FAVDTFGPYT ETKRRKRHHF LTHAHKDHTV GVSPSNIVVF PIYSTSLTIS LLLQRFPQLD ESYFVRVEIG QSVIVDDPDG EFKVTAFDAN 101: HCPGAVMFLF EGSFGNILHT GDCRLTLDCL HSLPEKYVGR SHGMKPKCSL GYIFLDCTFG KSSHSQRFPT KHSAIRQIIN CIWNHPDAPV VYLACDMLGQ 201: EDVLLEVSRT FGSKIYVDKA TNLECFRSLM VIVPEIVSED PSSRFHIFSG FPKLYERTSA KLAEARSKLQ SEPLIIRPSA QWYVCDDEDD WKSGSIQKQR 301: KVRFSEAVKD EFGLWHVCYS MHSSRAELES AMQLLSPKWV VSTVPSCRAM ELNYVKKNCF ISRFSPDDPF WKLLDIDMEA SPVAAADTQT VALSCCLMSE 401: QIILDSGKSK LEPVIESSST KKKLLSLSPE NSLPVTLFGR ARQSSQECDQ LHERKVIHTQ CVYTKTSPVL EKLNVKVVIE PLQDDTKEET VEKESCTIFS 501: TSTSKETCKD LSGDLRKLYR SMNAPVPRPL PSLMELMNAR KRSRNHLSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)