AT1G18990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.952 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF593 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G74830.1); Has 1377 Blast hits to 1217 proteins in 215 species: Archae - 6; Bacteria - 79; Metazoa - 450; Fungi - 121; Plants - 429; Viruses - 14; Other Eukaryotes - 278 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6558778..6560432 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59881.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 524 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNRSFKNFI EEELGTFPQF LIYALLEWIL IIILFIDGFL AFFSNQIAKF FDLKIPCLLC TRLDHVLVSR NPDFYYNDSI CDAHKKNVSS LAYCHVHKKL 101: SEIKRMCEGC LLSFATEKET DVDTYKSLIG ILHKDLELLI DDERELQLAF PVAGSKKDEN FYQVENRTNN SNDRFQRQQR CSCCGQIMKL KSDKPKSNNQ 201: SFFGAPSPSP RVSFNQRTLD LSNIKYTDLP EDDDALNTKG ASLDAVDDRT PSFVKGGNKF FGIPLSDSAQ NSPRWSVRSM KKSFVDQNGL ESEVLDGDSI 301: LQHLNRQVRL DRKSLMDLYM ELDEERSASA VAANNAMAMI TRLQAEKAAV QMEALQYQRM MDEQAEYDQE ALQSMNGLLV KREEEMKELE AGIEVYRLRY 401: GLLREERGEA EEFLDEETKP VSDLPVCSSN HEEDLEQMKD SAEDSIGNNG VMIIEEEKEN GSRKDMLVKE ISEITERLNA IESKGELLQQ ISDVLDVSEG 501: EAILLQISQN LHMLRSFIEM PTES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)