AT1G18190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : golgin candidate 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508–668 aa) portion of the protein. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
golgin candidate 2 (GC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: golgin candidate 1 (TAIR:AT2G19950.1); Has 50245 Blast hits to 32562 proteins in 2069 species: Archae - 503; Bacteria - 6561; Metazoa - 24889; Fungi - 4466; Plants - 2316; Viruses - 153; Other Eukaryotes - 11357 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6257963..6261325 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74791.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.38 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 668 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANWISSKLK AAETILQQLD QQAADSLRKD EKSETHDEVF ETSPKSGSSP VSLKDQLRKK TYEGSDSGSG SQRNSTEQKP SYLSSSKKVR KPDQSHERTS 101: APSQSLTQDN TKLTDNDWTE LLSTPNQRTS TSTSRSPGGT SAIRGLKKDG KRHGNLGKNP LVSDGKKSSS SNVVNSRGRP QKQTNKEPSD KEVSSPSDAD 201: MKNRNAPRDI FVNSTHKESE KDVSGKTPPL DDSRRSANET LPRETSPSVG KRDGRESRRS SVWGKQVREE VSQSNVSDGL TRKESSLSSD ESESDYESDS 301: STDSERERQR EERRRRRERV FAEKVATKAV AVIKERENMV ARLEGEKLSL EKIVEERAKQ QAQEAAELQT NMMETLEAAD LEKQKHNNTR MEVLTRLAGL 401: EAENAELTRS LAAGQKKLET QIDQVAVLKQ QVELKESTLE ELKRNTFNIG GRGTTLKQLD TSRGDKFEHQ MLEAEISLLT DKIGRLQDKA TKLEADIEMM 501: RKELEEPTEV EIELKRRLNQ LTDHLIQKQS QVEALSSEKA TILFRIEAVS RLIEENKGMS ATEASSQDLE AGDWELSGSK FKPAFQDKIR SGKKHLGWLV 601: MQLNAIFISG TVFLRRNPTA KIWAVVYLVC LHLWVLYILL SHSDASSSGE LRSGAVISLE NFSNSSLQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)