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AT5G15880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGQ6eggNOG:ENOG4111P5IEMBL:AL391145EMBL:AY099605
EMBL:BT008833EMBL:CP002688EnsemblPlants:AT5G15880EnsemblPlants:AT5G15880.1
entrez:831445GeneID:831445GO:GO:0016021Gramene:AT5G15880.1
hmmpanther:PTHR37761hmmpanther:PTHR37761:SF1HOGENOM:HOG000084669KEGG:ath:AT5G15880
ncoils:CoilOMA:HIVVFIKPhylomeDB:Q9LFT2PIR:T51371
Proteomes:UP000006548RefSeq:NP_197092.1STRING:3702.AT5G15880.1TAIR:AT5G15880
TMHMM:TMhelixUniGene:At.43291UniGene:At.66717UniProt:Q9LFT2
Coordinates (TAIR10) chr5:+:5185788..5187461
Molecular Weight (calculated) 39571.50 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.74
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLLAWAAD VVGKNGKEGD DEKDRIPLVF TEEQQKYVDE LGRKATNLSR SIQDLRLRLP PPDISQRLPD LHAHSLASNA ALTLQLDSHS ATREQAHMRE
101: QTLLEENSAY ENAISTCETK IEEKRNEADS LLRKLKELEA VEENLKTEQD NAQASLDARQ SKSSSETVIQ PDGNGKDGAD TEAMKSFMLE KLESKKNDMS
201: LMEEKVQDLE RSWAVIQERA LKQPSPAQRE KTLDKQLHSL IEQLAAKQAQ AEGIVGEIHL NEMELERLNN LWRRYESFNV EGNAARNRFK RTNSDREFTS
301: DHEVDGHSYL PYSSATRNGT QTRLMYLRSA FVVYILALQV LVFIRISF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)