AT1G04940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : translocon at the inner envelope membrane of chloroplasts 20 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1399588..1400616 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31205.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.83 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 274 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITGYSTPSA HVLMSSRAFK SSSYRAAAGQ TQHYLARSSL PVVKNSWGSP PSPFNELPRV SRGVPLSYLS ASSSLLLNGE QGSLSGTLPV LPVRRKTLLT 101: PRASKDVPSS FRFPPMTKKP QWWWRTLACL PYLMPLHETW MYAETAYHLH PFLEDFEFLT YPFLGAIGRL PSWFLMAYFF VAYLGIVRRK EWPHFFRFHV 201: VMGMLLEIAL QVIGTVSKWM PLGVYWGKFG MHFWTAVAFA YLFTVLESIR CALAGMYADI PFVCDAAYIQ IPYD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)