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ATCG00490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:26987276 (2016): plastid
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24012629 (2013): nucleus
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19288221 (2010): plastid
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ribulose-bisphosphate carboxylases
Curator
Summary (TAIR10)
large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational
Description (TAIR10)
RBCL; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to cadmium ion, carbon fixation, peptidyl-cysteine S-nitrosylation, response to abscisic acid stimulus; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, large subunit, C-terminal (InterPro:IPR000685), Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal (InterPro:IPR017443), Ribulose bisphosphate carboxylase, large subunit, N-terminal (InterPro:IPR017444), Ribulose bisphosphate carboxylase, large chain, active site (InterPro:IPR020878); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase large chain, catalytic domain (TAIR:AT2G07732.1).
Protein Annotations
BioCyc:ARA:ATCG00490-MONOMERBioCyc:MetaCyc:ATCG00490-MONOMERBioGrid:29958BRENDA:4.1.1.39EC:4.1.1.39eggNOG:COG1850eggNOG:ENOG410IIVP
EMBL:AB003522EMBL:AP000423EMBL:D88901EMBL:U91966EnsemblPlants:ATCG00490EnsemblPlants:ATCG00490.1entrez:844754
Gene3D:3.20.20.110Gene3D:3.30.70.150GeneID:844754Genevisible:O03042GO:GO:0000287GO:GO:0004497GO:GO:0009507
GO:GO:0009853GO:GO:0016984GO:GO:0019253Gramene:ATCG00490.1HAMAP:MF_01338hmmpanther:PTHR23321hmmpanther:PTHR23321:SF31
HOGENOM:HOG000230831InParanoid:O03042IntAct:O03042InterPro:IPR000685InterPro:IPR017443InterPro:IPR020878InterPro:IPR020888
iPTMnet:O03042KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39KEGG:ath:ArthCp030KO:K01601OMA:FTQDWASPaxDb:O03042
Pfam:O03042Pfam:PF00016Pfam:PF02788PRIDE:O03042PRO:PR:O03042PROSITE:PS00157ProteinModelPortal:O03042
Proteomes:UP000006548RefSeq:NP_051067.1scanprosite:PS00157SMR:O03042STRING:3702.ATCG00490.1SUPFAM:SSF51649SUPFAM:SSF54966
SWISS-2DPAGE:O03042TAIR:ATCG00490tair10-symbols:RBCLUniProt:O03042
Coordinates (TAIR10) chrC:+:54958..56397
Molecular Weight (calculated) 52957.90 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.27
Length 479 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)