AT5G56380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like/FBD-like domains-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22838836..22840353 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49906.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.79 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 439 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRISHLADE ILSKILSFLG TKDVMQTMLL SKRFKSQWLL VPKLEFDDST HLPETWGYQE PDYGNFRRFV DRSLLSREGR VLQTLFLKLG RQCSYDDIAI 101: WVGIAVKRGL MELKLKYTDS YYPKRSSLPR SLYTCETLVV LKLKKGYLDV PDLVCLRSLK TLSLRDMNYS NASCLLRLLA SCPVLEELFI QQGYYDSCAL 201: SFKIILPCLK KLSYLPKRKK KYSGIDRSEV SGGISGLVLD APSLKYLHIV DRSGLFSVSE IININAVVKA TLEVNASRPE KLLYSLVSVE HIRLCLSATE 301: VVYPVGLGSS FHKLKRLEVC TCKSEWLDLF IHLLEDSPSL QDIKINQCHP VTNPRPQWNQ PGSVPRCLSS SLETLEWVEY GGTHEEKELS TYLFKTAVCF 401: KKASFTAKWS GGDANKKLQM LQELALSPRV SPTCELVFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)