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AT5G24020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : septum site-determining protein (MIND)
Curator
Summary (TAIR10)
Encodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus. Its ATPase activity is stimulated by AtMinE1, a topological specificity factor.
Computational
Description (TAIR10)
MIND; FUNCTIONS IN: calcium-dependent ATPase activity, protein binding, ATPase activity, protein homodimerization activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Septum site-determining protein MinD (InterPro:IPR010223), Cobyrinic acid a,c-diamide synthase (InterPro:IPR002586); BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17742eggNOG:COG2894eggNOG:ENOG410IPBNEMBL:AB009056EMBL:AB030278EMBL:BT002027EMBL:BT008819
EMBL:CP002688EnsemblPlants:AT5G24020EnsemblPlants:AT5G24020.1entrez:832467Gene3D:3.40.50.300GeneID:832467Genevisible:Q9MBA2
GO:GO:0000918GO:GO:0005524GO:GO:0009507GO:GO:0009570GO:GO:0009706GO:GO:0009941GO:GO:0010020
GO:GO:0016887GO:GO:0030899GO:GO:0042802GO:GO:0042803Gramene:AT5G24020.1hmmpanther:PTHR13696hmmpanther:PTHR13696:SF1
HOGENOM:HOG000019419InParanoid:Q9MBA2IntAct:Q9MBA2InterPro:IPR002586InterPro:IPR010223InterPro:IPR027417KEGG:ath:AT5G24020
KO:K03609MINT:MINT-4509188OMA:RVILICSPaxDb:Q9MBA2Pfam:PF01656Pfam:Q9MBA2PhylomeDB:Q9MBA2
PRIDE:Q9MBA2PRO:PR:Q9MBA2ProteinModelPortal:Q9MBA2Proteomes:UP000006548RefSeq:NP_197790.1SMR:Q9MBA2STRING:3702.AT5G24020.1
SUPFAM:SSF52540TAIR:AT5G24020tair10-symbols:ARC11tair10-symbols:ATMIND1tair10-symbols:MINDTIGRfam:TIGR01968TIGRFAMs:TIGR01968
UniGene:At.5430UniProt:Q9MBA2
Coordinates (TAIR10) chr5:+:8116731..8117711
Molecular Weight (calculated) 35692.50 Da
IEP (calculated) 7.83
GRAVY (calculated) 0.01
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLRLFSTN HQSLLLPSSL SQKTLISSPR FVNNPSRRSP IRSVLQFNRK PELAGETPRI VVITSGKGGV GKTTTTANVG LSLARYGFSV VAIDADLGLR
101: NLDLLLGLEN RVNYTCVEVI NGDCRLDQAL VRDKRWSNFE LLCISKPRSK LPMGFGGKAL EWLVDALKTR PEGSPDFIII DCPAGIDAGF ITAITPANEA
201: VLVTTPDITA LRDADRVTGL LECDGIRDIK MIVNRVRTDM IKGEDMMSVL DVQEMLGLSL LGVIPEDSEV IRSTNRGFPL VLNKPPTLAG LAFEQAAWRL
301: VEQDSMKAVM VEEEPKKRGF FSFFGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)