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AT4G14230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.918
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT4G14240.1); Has 10651 Blast hits to 10438 proteins in 2476 species: Archae - 104; Bacteria - 7995; Metazoa - 296; Fungi - 275; Plants - 231; Viruses - 0; Other Eukaryotes - 1750 (source: NCBI BLink).
Protein Annotations
BioGrid:12361eggNOG:COG1253eggNOG:KOG2118EMBL:AK226439EMBL:AL161538EMBL:BT023429EMBL:CP002687
EMBL:Z97335EnsemblPlants:AT4G14230EnsemblPlants:AT4G14230.1entrez:827064GeneID:827064Genevisible:Q4V3C7GO:GO:0005739
GO:GO:0016021Gramene:AT4G14230.1hmmpanther:PTHR12064hmmpanther:PTHR12064:SF32HOGENOM:HOG000183089InParanoid:Q4V3C7InterPro:IPR000644
InterPro:IPR002550iPTMnet:Q4V3C7KEGG:ath:AT4G14230KO:K16302OMA:YFIHAIWPaxDb:Q4V3C7Pfam:PF01595
Pfam:Q4V3C7Pfscan:PS51371PhylomeDB:Q4V3C7PIR:H71403PRIDE:Q4V3C7PRO:PR:Q4V3C7PROSITE:PS51371
ProteinModelPortal:Q4V3C7Proteomes:UP000006548RefSeq:NP_193159.3SMR:Q4V3C7STRING:3702.AT4G14230.1SUPFAM:SSF54631TAIR:AT4G14230
TMHMM:TMhelixUniGene:At.33302UniProt:Q4V3C7
Coordinates (TAIR10) chr4:-:8200850..8203130
Molecular Weight (calculated) 53495.00 Da
IEP (calculated) 6.52
GRAVY (calculated) 0.06
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MHPINAVVAA RMLAGISQSN ALQSEAIPFG SLEWITYAGI SCFLVLFAGI MSGLTLGLMS LGLVELEILQ RSGTPKEKKQ SAAIFPVVQK QHQLLVTLLL
101: FNALAMEGLP IYLDKIFNEY VAIILSVTFV LFVGEVIPQA ICTRYGLAVG ANLVWLVRIL MVLSYPISFP IAKMLDWVLG HNDPLFRRAQ LKALVSIHGE
201: AAGKGGELTH DETTIISGAL DLTEKTAQEA MTPIESTFSL DVNSKLDREA MDKIQARGHS RVPVYSDNPK NVIGLLLVKS LLTVRPETGT LVSAVGIRRI
301: PRVPANMPLY DILNEFQKGS SHMAAVVKVK GKSKGHPSTL HEENSGESNV SSNNSELTAP LLLKREGNHD SVIVRIDKAN GQSFISEAGR QGFSHTSEEI
401: EDGDVIGIIT LEDVFEELLQ EEIVDETDEY IDVHKRIRVA TVAAVAISSL ARAPSGRRLL GPKGSGGPKT PKASSTPKPD DKLMGTMTGP PQGNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)