suba logo
AT3G46970.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha-glucan phosphorylase 2
Curator
Summary (TAIR10)
Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.
Computational
Description (TAIR10)
alpha-glucan phosphorylase 2 (PHS2); FUNCTIONS IN: phosphorylase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cadmium ion, response to water deprivation; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 35 (InterPro:IPR000811), Glycogen/starch/alpha-glucan phosphorylase (InterPro:IPR011833); BEST Arabidopsis thaliana protein match is: Glycosyl transferase, family 35 (TAIR:AT3G29320.1); Has 5792 Blast hits to 5741 proteins in 1741 species: Archae - 74; Bacteria - 3953; Metazoa - 555; Fungi - 138; Plants - 232; Viruses - 2; Other Eukaryotes - 838 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G46970-MONOMERBioGrid:9170BRENDA:2.4.1.1CAZy:GT35EC:2.4.1.1eggNOG:COG0058eggNOG:KOG2099
EMBL:AL133292EMBL:AY056807EMBL:AY090236EMBL:BT003012EMBL:CP002686EnsemblPlants:AT3G46970EnsemblPlants:AT3G46970.1
entrez:823850ExpressionAtlas:Q9SD76GeneID:823850Genevisible:Q9SD76GO:GO:0004645GO:GO:0005829GO:GO:0005980
GO:GO:0008184GO:GO:0009414GO:GO:0009507GO:GO:0030170GO:GO:0046686Gramene:AT3G46970.1gramene_pathway:2.4.1.1
gramene_pathway:PWY-842hmmpanther:PTHR11468hmmpanther:PTHR11468:SF4HOGENOM:HOG000278444InParanoid:Q9SD76InterPro:IPR000811InterPro:IPR011833
iPTMnet:Q9SD76KEGG:00500+2.4.1.1KEGG:ath:AT3G46970KO:K00688OMA:WQGYSETPANTHER:PTHR11468PaxDb:Q9SD76
PDB:4BQEPDB:4BQFPDB:4BQIPDBsum:4BQEPDBsum:4BQFPDBsum:4BQIPfam:PF00343
Pfam:Q9SD76PhylomeDB:Q9SD76PIR:T45633PIRSF:PIRSF000460PRIDE:Q9SD76PRO:PR:Q9SD76PROSITE:PS00102
ProteinModelPortal:Q9SD76Proteomes:UP000006548Reactome:R-ATH-70221RefSeq:NP_190281.1scanprosite:PS00102SMR:Q9SD76STRING:3702.AT3G46970.1
SUPFAM:SSF53756TAIR:AT3G46970tair10-symbols:ATPHS2tair10-symbols:PHS2TIGRfam:TIGR02093TIGRFAMs:TIGR02093UniGene:At.879
UniProt:Q9SD76UniProt:W8PUR4
Coordinates (TAIR10) chr3:-:17301625..17306111
Molecular Weight (calculated) 95164.30 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.38
Length 841 amino acids
Sequence (TAIR10)
(BLAST)
001: MANANGKAAT SLPEKISAKA NPEADDATEI AGNIVYHAKY SPHFSPLKFG PEQALYATAE SLRDRLIQLW NETYVHFNKV DPKQTYYLSM EYLQGRALTN
101: AIGNLNLQGP YADALRTLGY ELEEIAEQEK DAALGNGGLG RLASCFLDSM ATLNLPAWGY GLRYRHGLFK QIITKKGQEE IPEDWLEKFS PWEIVRHDVV
201: FPVRFFGKVQ VNPDGSRKWV DGDVVQALAY DVPIPGYGTK NTISLRLWEA KARAEDLDLF QFNEGEYELA AQLHSRAQQI CTVLYPGDAT ENGKLLRLKQ
301: QFFLCSASLQ DIISRFHERS TTEGSRKWSE FPSKVAVQMN DTHPTLAIPE LMRLLMDDNG LGWDEAWDVT SKTVAYTNHT VLPEALEKWS QSLMWKLLPR
401: HMEIIEEIDK RFVQTIRDTR VDLEDKISSL SILDNNPQKP VVRMANLCVV SSHTVNGVAQ LHSDILKAEL FADYVSIWPN KFQNKTNGIT PRRWLRFCSP
501: ELSDIITKWL KTDKWITDLD LLTGLRQFAD NEELQSEWAS AKTANKKRLA QYIERVTGVS IDPTSLFDIQ VKRIHEYKRQ LMNILGVVYR FKKLKEMKPE
601: ERKKTVPRTV MIGGKAFATY TNAKRIVKLV NDVGDVVNSD PEVNEYLKVV FVPNYNVTVA EMLIPGSELS QHISTAGMEA SGTSNMKFAL NGCLIIGTLD
701: GANVEIREEV GEENFFLFGA TADQVPRLRK EREDGLFKPD PRFEEAKQFV KSGVFGSYDY GPLLDSLEGN TGFGRGDYFL VGYDFPSYMD AQAKVDEAYK
801: DRKGWLKMSI LSTAGSGKFS SDRTIAQYAK EIWNIEACPV P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)