AT3G27473.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.392 plasma membrane 0.228 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G42840.1); Has 1850 Blast hits to 730 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 1744; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10169242..10171230 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75609.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 662 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFRLEGHEH RVSIVSSGDS LECDACDRSS GDGFSCSECK FTVHRKCAFV FMTEDIFHHP SHDGHCLKLL TTGAPVHTDS KCHLCGKNTK HLLYHCYDCK 101: VNLDIDCMID GICTLARLSK PWHPHLLLMV DFSSDMWCDF CYEGGKHGYF CPRCRLVIHE SCVSVFDSPE INHPSHLSHP LKLITNGAPD YTEDRSCHIC 201: GKETGNLLYH CDICKFNLDM ECAVENPIPV ALSDLKVHEH TLTLMPRLIS FICDACGTKG DRAPYVCVQC DFRMFHQKCA RLPRVIHVNH HDHRVSYKYP 301: LGPGEWRCGV CWEEIDWSYG AYSCSLCPNY AIHSLCATRK DVWDGKELDG VPEEVEDIEP FKRNDDNTIT HFAHEHNLSL HNDDEESSLC GACVHPIGSY 401: TFYKCSKSYC GFFLHERCAN LATKKRHFLS PQPLDLSLQW IPYVLGRCRA CRQMFSEGFI YNSYRDKFDL LCSSITVPFI HGSHDHHLLY YKLRYGQVKT 501: CQNCGIDETE VLGCSKCNYY LDFCCATLPK TVMLPRYDDH PLTLCYGDEN ASGKYWCDIC ERETNPKTWF YTCKDCGVTF HILCVVGDIR YAKPGGKING 601: DYELLANNSS SRPLCSTCHC RCPGPFILNK ERNNIFFCSY YCLGLSREHA YSSVDVCPPW AI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)