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AT3G22960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pyruvate kinase family protein
Curator
Summary (TAIR10)
encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.
Computational
Description (TAIR10)
PKP-ALPHA; FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, lipid metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidic pyruvate kinase beta subunit 1 (TAIR:AT5G52920.1); Has 10289 Blast hits to 10239 proteins in 2715 species: Archae - 167; Bacteria - 6049; Metazoa - 538; Fungi - 221; Plants - 529; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
Protein Annotations
BioGrid:7202EC:2.7.1.40eggNOG:COG0469eggNOG:KOG2323EMBL:AP001300EMBL:AY056196EMBL:AY056793
EMBL:AY058084EMBL:AY085149EMBL:BT002329EMBL:CP002686EnsemblPlants:AT3G22960EnsemblPlants:AT3G22960.1entrez:821870
Gene3D:2.40.33.10Gene3D:3.20.20.60Gene3D:3.40.1380.20GeneID:821870Genevisible:Q9LIK0GO:GO:0000287GO:GO:0004743
GO:GO:0005524GO:GO:0006629GO:GO:0009507GO:GO:0009570GO:GO:0010431GO:GO:0016301GO:GO:0030955
GO:GO:0046686Gramene:AT3G22960.1hmmpanther:PTHR11817hmmpanther:PTHR11817:SF14HOGENOM:HOG000021559InParanoid:Q9LIK0IntAct:Q9LIK0
InterPro:IPR001697InterPro:IPR011037InterPro:IPR015793InterPro:IPR015794InterPro:IPR015795InterPro:IPR015806InterPro:IPR015813
InterPro:IPR018209iPTMnet:Q9LIK0KEGG:00010+2.7.1.40KEGG:00230+2.7.1.40KEGG:00620+2.7.1.40KEGG:ath:AT3G22960KO:K00873
OMA:AADFPNPPANTHER:PTHR11817PaxDb:Q9LIK0Pfam:PF00224Pfam:PF02887Pfam:Q9LIK0PhylomeDB:Q9LIK0
PRIDE:Q9LIK0PRINTS:PR01050PRO:PR:Q9LIK0PROSITE:PS00110ProteinModelPortal:Q9LIK0Proteomes:UP000006548RefSeq:NP_566720.1
SABIO-RK:Q9LIK0scanprosite:PS00110SMR:Q9LIK0STRING:3702.AT3G22960.1SUPFAM:SSF50800SUPFAM:SSF51621SUPFAM:SSF52935
TAIR:AT3G22960tair10-symbols:PKP-ALPHAtair10-symbols:PKP1TIGRfam:TIGR01064TIGRFAMs:TIGR01064UniGene:At.5909UniGene:At.74807
UniGene:At.75004UniPathway:UPA00109UniProt:Q9LIK0
Coordinates (TAIR10) chr3:+:8139369..8141771
Molecular Weight (calculated) 65134.80 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.10
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQSIQFSTP SHTPHLLHLP HSQFNRPLSS ISFRRFPLTT IKYTSIRASS SSSPSPDLDS SSSSSSSQVL LSPNGTGAVK SDERSVVATA VTTDTSGIEV
101: DTVTEAELKE NGFRSTRRTK LICTIGPATC GFEQLEALAV GGMNVARLNM CHGTRDWHRG VIRSVRRLNE EKGFAVAIMM DTEGSEIHMG DLGGEASAKA
201: EDGEVWTFTV RAFDSSRPER TISVSYDGFA EDVRVGDELL VDGGMVRFEV IEKIGPDVKC LCTDPGLLLP RANLTFWRDG SLVRERNAML PTISSKDWLD
301: IDFGIAEGVD FIAVSFVKSA EVINHLKSYL AARSRGGEIG VIAKIESIDS LTNLEEIILA SDGAMVARGD LGAQIPLEQV PAAQQRIVQV CRALNKPVIV
401: ASQLLESMIE YPTPTRAEVA DVSEAVRQRS DALMLSGESA MGQFPDKALT VLRTVSLRIE RWWREEKRHE SVPLQAIGSS FSDKISEEIC NSAAKMANNL
501: GVDAVFVYTT SGHMASLVSR CRPDCPIFAF TTTTSVRRRL NLQWGLIPFR LSFSDDMESN LNKTFSLLKS RGMIKSGDLV IAVSDMLQSI QVMNVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)