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AT2G38040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit
Curator
Summary (TAIR10)
encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis
Computational
Description (TAIR10)
acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (CAC3); FUNCTIONS IN: acetyl-CoA carboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: acetyl-CoA carboxylase complex, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-CoA carboxylase, alpha subunit, conserved region (InterPro:IPR020582), Acetyl-CoA carboxylase, alpha subunit (InterPro:IPR001095), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763); Has 39620 Blast hits to 29201 proteins in 2891 species: Archae - 603; Bacteria - 9663; Metazoa - 14634; Fungi - 2688; Plants - 1525; Viruses - 82; Other Eukaryotes - 10425 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38040-MONOMERBioCyc:ARA:GQT-1836-MONOMERBioGrid:3726EC:6.4.1.2eggNOG:COG0825eggNOG:ENOG410IEWMEMBL:AF056969
EMBL:AF056970EMBL:AK221200EMBL:CP002685EnsemblPlants:AT2G38040EnsemblPlants:AT2G38040.1EnsemblPlants:AT2G38040.2entrez:818382
Gene3D:3.90.226.10GeneID:818382Genevisible:Q9LD43GO:GO:0003989GO:GO:0005524GO:GO:0006633GO:GO:0009317
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009706GO:GO:0009941GO:GO:0016020GO:GO:2001295
Gramene:AT2G38040.1Gramene:AT2G38040.2HAMAP:MF_00823hmmpanther:PTHR22855hmmpanther:PTHR22855:SF38HOGENOM:HOG000273832InParanoid:Q9LD43
InterPro:IPR001095InterPro:IPR011763InterPro:IPR029045iPTMnet:Q9LD43KEGG:00061+6.4.1.2KEGG:00253+6.4.1.2KEGG:00254+6.4.1.2
KEGG:00620+6.4.1.2KEGG:00640+6.4.1.2KEGG:00720+6.4.1.2KEGG:ath:AT2G38040KO:K01962ncoils:CoilOMA:YPWPEDP
PaxDb:Q9LD43Pfam:PF03255Pfam:Q9LD43Pfscan:PS50989PhylomeDB:Q9LD43PRIDE:Q9LD43PRINTS:PR01069
PRO:PR:Q9LD43PROSITE:PS50989ProteinModelPortal:Q9LD43Proteomes:UP000006548RefSeq:NP_565880.1RefSeq:NP_850291.1SMR:Q9LD43
STRING:3702.AT2G38040.1SUPFAM:SSF52096TAIR:AT2G38040tair10-symbols:CAC3TIGRfam:TIGR00513TIGRFAMs:TIGR00513UniGene:At.22739
UniPathway:UPA00655UniProt:Q9LD43
Coordinates (TAIR10) chr2:+:15917612..15920749
Molecular Weight (calculated) 85310.90 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.52
Length 769 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISHSSLA LGGASSASAS DYLRSSSNGV NGVPLKTLGR AVFTTIRRKD LAVTSRLKKG KKFEHPWPAN PDPNVKGGVL SYLAEFKPLG DTQKPVTLDF
101: EKPLVELEKK IVDVRKMANE TGLDFTEQII TLENKYRQAL KDLYTHLTPI QRVNIARHPN RPTFLDHIHN ITDKFMELHG DRAGYDDPAI VTGIGTIDGK
201: RYMFIGHQKG RNTKENIMRN FGMPTPHGYR KALRMMYYAD HHGFPIVTFI DTPGAYADLK SEELGQGEAI ANNLRTMFGL KVPILSIVIG EGGSGGALAI
301: GCANKMLMLE NAVFYVASPE ACAAILWKTS KAAPEAAEKL RITSKELVKL NVADGIIPEP LGGAHADPSW TSQQIKIAIN ENMNEFGKMS GEELLKHRMA
401: KYRKIGVFIE GEPIEPSRKI NMKKREAVFS DSRKLQGEVD KLKEQILKAK ETSTEAEPSS EVLNEMIEKL KSEIDDEYTE AAIAVGLEER LTAMREEFSK
501: ASSEEHLMHP VLIEKIEKLK EEFNTRLTDA PNYESLKSKL NMLRDFSRAK AASEATSLKK EINKRFQEAV DRPEIREKVE AIKAEVASSG ASSFDELPDA
601: LKEKVLKTKG EVEAEMAGVL KSMGLELDAV KQNQKDTAEQ IYAANENLQE KLEKLNQEIT SKIEEVVRTP EIKSMVELLK VETAKASKTP GVTEAYQKIE
701: ALEQQIKQKI AEALNTSGLQ EKQDELEKEL AAARELAAEE SDGSVKEDDD DDEDSSESGK SEMVNPSFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)