suba logo
AT2G37220.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25740923 (2015): plastid
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 (TAIR:AT3G53460.3); Has 997478 Blast hits to 497195 proteins in 22066 species: Archae - 21542; Bacteria - 603238; Metazoa - 188798; Fungi - 28200; Plants - 60491; Viruses - 70820; Other Eukaryotes - 24389 (source: NCBI BLink).
Protein Annotations
BioGrid:3643eggNOG:ENOG410IQX9eggNOG:ENOG4111MZ2EMBL:AC005896EMBL:AC006260EMBL:AF370167EMBL:AY048251
EMBL:AY059129EMBL:AY088648EMBL:CP002685EnsemblPlants:AT2G37220EnsemblPlants:AT2G37220.1entrez:818299Gene3D:3.30.70.330
GeneID:818299Genevisible:Q9ZUU4GO:GO:0000166GO:GO:0006397GO:GO:0008266GO:GO:0009409GO:GO:0009507
GO:GO:0009534GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0009737GO:GO:0009941GO:GO:0010319
GO:GO:0030529GO:GO:0045087Gramene:AT2G37220.1hmmpanther:PTHR24012HOGENOM:HOG000276232InParanoid:Q9ZUU4IntAct:Q9ZUU4
InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9ZUU4KEGG:ath:AT2G37220KO:K11294OMA:WHGRRINPaxDb:Q9ZUU4
Pfam:PF00076Pfam:Q9ZUU4Pfscan:PS50102PhylomeDB:Q9ZUU4PIR:A84790PRIDE:Q9ZUU4PRO:PR:Q9ZUU4
PROSITE:PS50102ProteinModelPortal:Q9ZUU4Proteomes:UP000006548RefSeq:NP_181259.1SMART:SM00360SMR:Q9ZUU4STRING:3702.AT2G37220.1
SUPFAM:SSF54928SWISS-2DPAGE:Q9ZUU4TAIR:AT2G37220UniGene:At.25300UniProt:Q9ZUU4
Coordinates (TAIR10) chr2:-:15634980..15636331
Molecular Weight (calculated) 30719.60 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.32
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASASSLAL SSFNPKSLPF GVSRPASVSL LSPSLSFKLN SDSVSFSIAA KWNSPASRFA RNVAITSEFE VEEDGFADVA PPKEQSFSAD LKLFVGNLPF
101: NVDSAQLAQL FESAGNVEMV EVIYDKITGR SRGFGFVTMS SVSEVEAAAQ QFNGYELDGR PLRVNAGPPP PKREDGFSRG PRSSFGSSGS GYGGGGGSGA
201: GSGNRVYVGN LSWGVDDMAL ESLFSEQGKV VEARVIYDRD SGRSKGFGFV TYDSSQEVQN AIKSLDGADL DGRQIRVSEA EARPPRRQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)