AT2G34640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plastid transcriptionally active 12 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plastid transcriptionally active 12 (PTAC12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 330 Blast hits to 283 proteins in 92 species: Archae - 0; Bacteria - 6; Metazoa - 99; Fungi - 32; Plants - 40; Viruses - 9; Other Eukaryotes - 144 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14582061..14584345 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60898.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASISTTTWL YRGQVCTDSG KSSNCIVQRR VKCGFPLKTL HAGITSRDRS LRHCIKCKKE DGDGDVSEGS KKSEEGFEYV TVERHPYHSY MDSTSGKLEP 101: ASGARASIPG EDYWPEGTSS RVRAARAPQP AGESSSFPSY GKNPGSRRKK NRKATEENVT VETNDEVSDS EDSSEEEEND SSDGFVTYKN EFEREEEETG 201: FELDKKLGRP HPFIDPTKKK QIEKTLTSDE SWWNWRKPEK EQWSRWQRRR PDVETVFLKA MAETGQVKLY GEEPTLTETS LYRARRHLFK EERLQAERER 301: LAKEGPMAFY SEWVKAWKRD TSREAVQKHF EETGEDENTQ LIEMFSHQTD REYRIMMGTD IRIKRDPLAM RMREDQIKQI WGGDPVYPTI NYIQDPNAVM 401: DFRGPDFHEP TPNMLSYLKE NGKVISREMH EALLTKEKTE QLEVPDMDDA MAQAVDIGEN DDDEDDADVE KDDEKVPRNW SVLKETPELR TAKPKPKKEG 501: RMSLDEAVDD AENLTDFLMD FEEETDP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)