suba logo
AT2G27510.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ferredoxin 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ferredoxin 3 (FD3); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G60950.1); Has 7538 Blast hits to 7536 proteins in 1339 species: Archae - 137; Bacteria - 5569; Metazoa - 7; Fungi - 12; Plants - 623; Viruses - 5; Other Eukaryotes - 1185 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0633eggNOG:ENOG410IYZGEMBL:AC006232EMBL:AY086622EMBL:BT004187EMBL:BT005393EMBL:CP002685
EnsemblPlants:AT2G27510EnsemblPlants:AT2G27510.1entrez:817297Gene3D:3.10.20.30GeneID:817297Genevisible:Q9ZQG8GO:GO:0009055
GO:GO:0009507GO:GO:0009536GO:GO:0022900GO:GO:0046872GO:GO:0051537Gramene:AT2G27510.1hmmpanther:PTHR19370
hmmpanther:PTHR19370:SF96HOGENOM:HOG000217152InParanoid:Q9ZQG8InterPro:IPR001041InterPro:IPR006058InterPro:IPR010241InterPro:IPR012675
KEGG:ath:AT2G27510KO:K02639OMA:QMEEGYVPaxDb:Q9ZQG8Pfam:PF00111Pfam:Q9ZQG8Pfscan:PS51085
PhylomeDB:Q9ZQG8PIR:G84673PRIDE:Q9ZQG8PRO:PR:Q9ZQG8PROSITE:PS00197PROSITE:PS51085ProteinModelPortal:Q9ZQG8
Proteomes:UP000006548RefSeq:NP_180320.1scanprosite:PS00197SMR:Q9ZQG8STRING:3702.AT2G27510.1SUPFAM:SSF54292TAIR:AT2G27510
tair10-symbols:ATFD3tair10-symbols:FD3TIGRfam:TIGR02008TIGRFAMs:TIGR02008UniGene:At.38754UniProt:Q9ZQG8
Coordinates (TAIR10) chr2:-:11758281..11758748
Molecular Weight (calculated) 16634.50 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.26
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)