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AT1G80680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SUPPRESSOR OF AUXIN RESISTANCE 3
Curator
Summary (TAIR10)
Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens.
Computational
Description (TAIR10)
SUPPRESSOR OF AUXIN RESISTANCE 3 (SAR3); FUNCTIONS IN: porin activity; INVOLVED IN: mRNA export from nucleus, defense response signaling pathway, resistance gene-dependent, response to auxin stimulus, negative regulation of flower development, developmental process; LOCATED IN: nuclear membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230), Nuclear protein 96 (InterPro:IPR021967); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 653 Blast hits to 526 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 224; Plants - 93; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU4ReggNOG:ENOG410ZXB8EMBL:AC011713EMBL:AF411838EMBL:AF411839EMBL:AY942798EMBL:CP002684
EMBL:U53501EnsemblPlants:AT1G80680EnsemblPlants:AT1G80680.1entrez:844407Gene3D:3.30.1610.10GeneID:844407Genevisible:Q8LLD0
GO:GO:0005634GO:GO:0005635GO:GO:0005643GO:GO:0006952GO:GO:0009733GO:GO:0009870GO:GO:0015031
GO:GO:0015288GO:GO:0031965GO:GO:0051028GO:GO:0055085Gramene:AT1G80680.1hmmpanther:PTHR23198hmmpanther:PTHR23198:SF0
HOGENOM:HOG000239775InParanoid:Q8LLD0InterPro:IPR007230InterPro:IPR021967iPTMnet:Q8LLD0KEGG:ath:AT1G80680KO:K14297
MEROPS:S59.A01OMA:EKKNESCPaxDb:Q8LLD0Pfam:PF04096Pfam:PF12110Pfam:Q8LLD0Pfscan:PS51434
PhylomeDB:Q8LLD0PIR:B96839PRIDE:Q8LLD0PRO:PR:Q8LLD0PROSITE:PS51434ProteinModelPortal:Q8LLD0Proteomes:UP000006548
RefSeq:NP_178183.2SMR:Q8LLD0STRING:3702.AT1G80680.1SUPFAM:0040175SUPFAM:SSF82215TAIR:AT1G80680tair10-symbols:MOS3
tair10-symbols:NUP96tair10-symbols:PREtair10-symbols:SAR3UniGene:At.21888UniProt:Q8LLD0
Coordinates (TAIR10) chr1:+:30324219..30328489
Molecular Weight (calculated) 119161.00 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.29
Length 1046 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTSLSIQPFP EISRMARDLD SRKKRRISLD GIAALCEHSK EIIDSLPMLN SPDYFLKPCI NELVEREIES PDYCSRVPDF TIGRIGYGYI RFLGNTDVRR
0101: LDLDHIVKFH RHEVIVYDDE SSKPVVGEGL NKAAEVTLVV NIPDLTWGKQ QVNHIAYKLK QSTERQGATF ISFDPDNGLW KFFVPHFSRF GLSDDEAEDI
0201: AMDDAPGLGD PVGLDGKKVA DIDEEDQMET SELELSHSLP AHLGLDPEKM KEMRMLMFPN EDEDESEDFR EQTSHLMTSL TKRNVRPSQK IAQRNSHQDP
0301: PPVVRKTPLA LLEYNPGNDK SSPGSILMVQ QNKNLAVRKS KTGGFELDIS HVTPLTDNYS RNVVDAALFM GRSFRAGWGP NGVLFHTGKP ICSSSSQMVL
0401: SSVINKEKIA IDKVVWDRKG KVQKELIDSA FEAPLSLHKE LNHVEEEVRF GSFSLKLQNV VTDRVVLSDI CRSYIGIIEK QLEVAGLSTS AKLFLMHQVM
0501: VWELIKVLFS ERQSTERLMY AASDNEEDVM QDVKEDSAKI DTEALPLIRR AEFSCWLQES VSHRVQEDVS DLNGSSYLEH LFFLLTGREL DSAVELAISK
0601: GDVRLACLLS QAGGSTVNRN DILQQLHLWR RNGLDFNFIE KERIKLYELL AGNIHDALQD FTIDWKRFLG LLMWHHLPPD SSLPIIFRSY QLLLNQAKAP
0701: WPVPIYIDEG PADGFVSDNK HSDILYYLML LHSKEEEEFG FLQTMFSAFS STDDPLDYHM IWHHRGILEA VGAFTSDDLH TLDMGFVAQL LSQGLCHWAI
0801: YVVLHIPFRE DHPYLHVTVI REILFQYCET WSSMESQRQF IKDLGIPSEW MHEALAVYYN YHGDFVKALD QFIECANWQR AHSIFMTSVA HSLFLSANHS
0901: EIWRIATSMD DRKSEIENWD LGAGIYMSFY LLKSSLQEDA DTMVELEPLD STNESCRNFV GRLNESLAVW GDRLPVEARV AYSKMAEEIC DLLLSDLSKN
1001: PSRETQLTCF ETAFDAPLPE DVRSTHLQDA VSLFSLYLSE TGQISA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)