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AT1G79850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein S17
Curator
Summary (TAIR10)
nuclear-encoded 30S chloroplast ribosomal protein S17
Computational
Description (TAIR10)
ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Protein Annotations
BioGrid:29542eggNOG:COG0186eggNOG:KOG1740EMBL:AC011717EMBL:AF386974EMBL:AY072539EMBL:CP002684
EMBL:J05215EMBL:Z11151EnsemblPlants:AT1G79850EnsemblPlants:AT1G79850.1entrez:844324Gene3D:2.40.50.140GeneID:844324
Genevisible:P16180GO:GO:0000312GO:GO:0003735GO:GO:0009507GO:GO:0009534GO:GO:0009570GO:GO:0009941
GO:GO:0019843GO:GO:0032544Gramene:AT1G79850.1HAMAP:MF_01345_Bhmmpanther:PTHR10744hmmpanther:PTHR10744:SF7HOGENOM:HOG000231340
InParanoid:P16180InterPro:IPR000266InterPro:IPR012340InterPro:IPR019979iPTMnet:P16180KEGG:ath:AT1G79850KO:K02961
OMA:RAMRSMQPANTHER:PTHR10744PaxDb:P16180Pfam:P16180Pfam:PF00366PhylomeDB:P16180PIR:S20942
PRIDE:P16180PRINTS:PR00973PRO:PR:P16180ProDom:PD001295PROSITE:PS00056ProteinModelPortal:P16180Proteomes:UP000006548
RefSeq:NP_178103.1scanprosite:PS00056SMR:P16180STRING:3702.AT1G79850.1SUPFAM:SSF50249TAIR:AT1G79850tair10-symbols:CS17
tair10-symbols:PRPS17tair10-symbols:RPS17UniGene:At.22304UniGene:At.69451UniProt:P16180
Coordinates (TAIR10) chr1:-:30041473..30041922
Molecular Weight (calculated) 16283.00 Da
IEP (calculated) 11.28
GRAVY (calculated) -0.31
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MITSSLTSSL QALKLSSPFA HGSTPLSSLS KPNSFPNHRM PALVPVIRAM KTMQGRVVCA TSDKTVAVEV VRLAPHPKYK RRVRMKKKYQ AHDPDNQFKV
101: GDVVRLEKSR PISKTKSFVA LPVIARAARK AEAGGDELLG LPLESQQPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)