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AT1G71920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g71920
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : HISTIDINE BIOSYNTHESIS 6B
Curator
Summary (TAIR10)
Encodes a protein that is believed to act as a histidinol-phosphate transaminase involved in histidine biosynthesis. If the gene encoding the other protein shown to have this function, HISN6A (AT5G10330), is disrupted, a residual level of histidine biosynthesis continues, suggesting that HISN6B can somewhat compensate for the loss of HISN6A.
Computational
Description (TAIR10)
HISTIDINE BIOSYNTHESIS 6B (HISN6B); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: histidinol phosphate aminotransferase 1 (TAIR:AT5G10330.2); Has 34816 Blast hits to 34816 proteins in 2921 species: Archae - 1024; Bacteria - 25539; Metazoa - 256; Fungi - 389; Plants - 456; Viruses - 0; Other Eukaryotes - 7152 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0079eggNOG:KOG0633EMBL:CP002684EnsemblPlants:AT1G71920EnsemblPlants:AT1G71920.1entrez:830897entrez:843523
ExpressionAtlas:F4IBL7Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:843523GO:GO:0000105GO:GO:0004400GO:GO:0030170
Gramene:AT1G71920.1gramene_pathway:2.6.1.9gramene_pathway:HISTSYN-PWYgramene_plant_reactome:1119509gramene_plant_reactome:6876182HAMAP:MF_01023hmmpanther:PTHR11751
hmmpanther:PTHR11751:SF3InterPro:IPR004839InterPro:IPR005861InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424KEGG:00340+2.6.1.9
KEGG:00350+2.6.1.9KEGG:00360+2.6.1.9KEGG:00400+2.6.1.9KEGG:00401+2.6.1.9KEGG:00960+2.6.1.9PaxDb:F4IBL7Pfam:PF00155
PRIDE:F4IBL7ProteinModelPortal:F4IBL7Proteomes:UP000006548RefSeq:NP_177337.1SMR:F4IBL7STRING:3702.AT5G10330.1SUPFAM:SSF53383
TAIR:AT1G71920tair10-symbols:HISN6BTIGRfam:TIGR01141TIGRFAMs:TIGR01141UniGene:At.49003UniGene:At.66855unipathway:UPA00031
UniProt:F4IBL7
Coordinates (TAIR10) chr1:+:27067168..27068999
Molecular Weight (calculated) 46363.10 Da
IEP (calculated) 6.19
GRAVY (calculated) -0.14
Length 415 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVINVQGSP SFSIHSSESN LRKSRALKKP FCSIRNRVYC AQSSSAAVDE SKNITMGDSF IRPHLRQLAA YQPILPFEVL SAQLGRKPED IVKLDANENP
101: YGPPPEATLG NMKFPYVYPD PQSRRLRDAL AQDSGLESEY ILVGCGADEL IDLIMRCVLD PGEKIIDCPP TFSMYVFDAA VNGAGVIKVP RNPDFSLNVD
201: RIAEVVELEK PKCIFLTSPN NPDGSIISED DLLKILEMPI LVVLDEAYIE FSGVESRMKW VKKYENLIVL RTFSKRAGLA GLRVGYGAFP LSIIEYLWRA
301: KQPYNVSVAG EVAALAALSN GKYLEDVRDA LVRERERLFG LLKEVPFLNP YPSYSNFILC EVTSGMDAKK LKEDLAKMGV MVRHYNSQEL KGYVRVSAGK
401: PEHTDVLMEC LKQFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)