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AT1G70310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.892
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : spermidine synthase 2
Curator
Summary (TAIR10)
Spermidine synthase.
Computational
Description (TAIR10)
spermidine synthase 2 (SPDS2); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5357 Blast hits to 5354 proteins in 1531 species: Archae - 177; Bacteria - 2946; Metazoa - 372; Fungi - 210; Plants - 425; Viruses - 0; Other Eukaryotes - 1227 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0421eggNOG:KOG1562EMBL:BT020360EnsemblPlants:AT1G70310EnsemblPlants:AT1G70310.1entrez:843367ExpressionAtlas:Q5PNT7
Gene3D:3.40.50.150GeneID:843367GO:GO:0006595GO:GO:0016740Gramene:AT1G70310.1gramene_pathway:2.5.1.16gramene_pathway:BSUBPOLYAMSYN-PWY
HAMAP:MF_00198hmmpanther:PTHR11558hmmpanther:PTHR11558:SF25InterPro:IPR001045InterPro:IPR029063InterPro:IPR030373InterPro:IPR030374
InterPro:IPR030668KEGG:00270+2.5.1.16KEGG:00330+2.5.1.16KEGG:00410+2.5.1.16KEGG:00480+2.5.1.16KEGG:ath:AT1G70310KO:K00797
OMA:EIVANCRPaxDb:Q5PNT7Pfam:O48661Pfam:PF01564Pfscan:PS51006PhylomeDB:Q5PNT7PIRSF:PIRSF000502
PRIDE:Q5PNT7PROSITE:PS01330PROSITE:PS51006ProteinModelPortal:Q5PNT7RefSeq:NP_177188.1scanprosite:PS01330SMR:Q5PNT7
STRING:3702.AT1G70310.1SUPFAM:SSF53335TAIR:AT1G70310tair10-symbols:SPDS2TIGRfam:TIGR00417TIGRFAMs:TIGR00417UniGene:At.20978
unipathway:UPA00248UniProt:O48661UniProt:Q5PNT7
Coordinates (TAIR10) chr1:-:26485497..26487352
Molecular Weight (calculated) 37142.10 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.12
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTQEASVT DLPVKRPREA EEDNNGGAME TENGGGEIKE PSCMSSIIPG WFSEISPMWP GEAHSLKVEK ILFQGKSDYQ DVIVFQSATY GKVLVLDGVI
101: QLTERDECAY QEMITHLPLC SISNPKKVLV IGGGDGGVLR EVARHSSVEQ IDICEIDKMV VDVAKQYFPN VAVGYEDPRV NLIIGDGVAF LKNAAEGTYD
201: AVIVDSSDPI GPAKELFEKP FFESVNRALR PGGVVCTQAE SLWLHMDIIE DIVSNCRDIF KGSVNYAWTS VPTYPSGVIG FMLCSSEGPQ VDFKKPVSLI
301: DTDESSIKSH CPLKYYNAEI HSAAFCLPSF AKKVIDSKAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)