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AT1G64510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EF1B/ribosomal protein S6 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 1523 Blast hits to 1523 proteins in 532 species: Archae - 0; Bacteria - 1112; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
Protein Annotations
BioGrid:27980eggNOG:ENOG410IWA8eggNOG:ENOG4111S82EMBL:AC009519EMBL:AY072344EMBL:AY085527EMBL:AY114581
EMBL:CP002684EnsemblPlants:AT1G64510EnsemblPlants:AT1G64510.1entrez:842759Gene3D:3.30.70.60GeneID:842759Genevisible:Q8VY91
GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009507GO:GO:0009535GO:GO:0009579GO:GO:0019843
Gramene:AT1G64510.1HAMAP:MF_00360hmmpanther:PTHR21011hmmpanther:PTHR21011:SF1HOGENOM:HOG000154193InParanoid:Q8VY91InterPro:IPR000529
InterPro:IPR014717InterPro:IPR020814iPTMnet:Q8VY91KEGG:ath:AT1G64510KO:K02990OMA:YSIRKKNPaxDb:Q8VY91
Pfam:PF01250Pfam:Q8VY91PhylomeDB:Q8VY91PRIDE:Q8VY91PRO:PR:Q8VY91ProteinModelPortal:Q8VY91Proteomes:UP000006548
RefSeq:NP_176632.1SMR:Q8VY91STRING:3702.AT1G64510.1SUPFAM:SSF54995TAIR:AT1G64510UniGene:At.23432UniGene:At.27560
UniProt:Q8VY91
Coordinates (TAIR10) chr1:-:23954993..23956205
Molecular Weight (calculated) 22762.10 Da
IEP (calculated) 5.99
GRAVY (calculated) -0.31
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSLCVSNS TICPLPNVSS QPLLSFSHSL RPFISKSKPM CASIQKRDGS QFVVKSQALD FSGTFFEGGF GSDDDPTSPS GSGVSTALED KPEPQCPPGL
101: RQYETMAVLR PDMSEDERLG LTQKYEELLV AGGGMYVEVF NRGVIPLAYS IRKKNKAGET NTYLDGIYLL FTYFTKPESI VPLETVLTAD DDIIRSSSFK
201: IKKRKYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)