suba logo
AT1G51100.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXWBeggNOG:ENOG410YJ74EMBL:AC079828EMBL:AK228877EMBL:AY087073EMBL:BT025782EMBL:CP002684
EnsemblPlants:AT1G51100EnsemblPlants:AT1G51100.1entrez:841533GeneID:841533GO:GO:0009507GO:GO:0009570Gramene:AT1G51100.1
hmmpanther:PTHR36719HOGENOM:HOG000238164KEGG:ath:AT1G51100ncoils:CoilOMA:REFGSKEPhylomeDB:Q9C685PIR:C96548
Proteomes:UP000006548RefSeq:NP_564582.1STRING:3702.AT1G51100.1TAIR:AT1G51100UniGene:At.37894UniProt:Q9C685
Coordinates (TAIR10) chr1:+:18934342..18934977
Molecular Weight (calculated) 24162.30 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.52
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTSTLLLP SLSSKNLHIA VPIRTNSFVR RTTKFSTKCS SNPESKDQFI NLTPAPESIN TTSAEKFPIE KRRRSEIIRD RTQRGIEKPE PPNFEIGWKR
101: TKEINLEKPK GYVIMDFLEK FEALMAREFG SKELLAKAGE IVAERAREEA EVLRDEGKVE ERMVTELFRV LKLMEMDLAM VKASVKDETL SQRIEQARAR
201: CRQAILVANS F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)