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AT1G32080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : membrane protein, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 3603 Blast hits to 3592 proteins in 1271 species: Archae - 22; Bacteria - 3356; Metazoa - 0; Fungi - 58; Plants - 57; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1346eggNOG:ENOG410ITCCEMBL:AC074309EMBL:AC084165EMBL:AY039880EMBL:AY087643EMBL:AY101515
EMBL:CP002684EnsemblPlants:AT1G32080EnsemblPlants:AT1G32080.1entrez:840100GeneID:840100Genevisible:Q9FVQ4GO:GO:0009507
GO:GO:0009658GO:GO:0009706GO:GO:0009853GO:GO:0009941GO:GO:0016020GO:GO:0016021GO:GO:0043879
GO:GO:0097339GO:GO:1901974GO:GO:1901975Gramene:AT1G32080.1hmmpanther:PTHR30249hmmpanther:PTHR30249:SF0HOGENOM:HOG000030114
InParanoid:Q9FVQ4InterPro:IPR007300iPTMnet:Q9FVQ4KEGG:ath:AT1G32080OMA:LMNFFEPPaxDb:Q9FVQ4Pfam:PF04172
Pfam:Q9FVQ4PhylomeDB:Q9FVQ4PIR:B86445PRIDE:Q9FVQ4PRO:PR:Q9FVQ4ProteinModelPortal:Q9FVQ4Proteomes:UP000006548
RefSeq:NP_564388.1STRING:3702.AT1G32080.1TAIR:AT1G32080TCDB:2.A.122.2.1TMHMM:TMhelixUniGene:At.16834UniProt:Q9FVQ4
Coordinates (TAIR10) chr1:-:11537572..11539756
Molecular Weight (calculated) 54019.90 Da
IEP (calculated) 10.06
GRAVY (calculated) 0.70
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLLATPIF SPLASSPARN RLSCSKIRFG SKNGKILNSD GAQKLNLSKF RKPDGQRFLQ MGSSKEMNFE RKLSVQAMDG AGTGNTSTIS RNVIAISHLL
101: VSLGIILAAD YFLKQAFVAA SIKFPSALFG MFCIFSVLMI FDSVVPAAAN GLMNFFEPAF LFIQRWLPLF YVPSLVVLPL SVRDIPAASG VKICYIVAGG
201: WLASLCVAGY TAIAVRKMVK TEMTEAEPMA KPSPFSTLEL WSWSGIFVVS FVGALFYPNS LGTSARTSLP FLLSSTVLGY IVGSGLPSSI KKVFHPIICC
301: ALSAVLAALA FGYASGSGLD PVLGNYLTKV ASDPGAGDIL MGFLGSVILS FAFSMFKQRK LVKRHAAEIF TSVIVSTVFS LYSTALVGRL VGLEPSLTVS
401: ILPRCITVAL ALSIVSLFEG TNSSLTAAVV VVTGLIGANF VQVVLDKLRL RDPIARGIAT ASSAHGLGTA ALSAKEPEAL PFCAIAYALT GIFGSLLCSV
501: PAVRQSLLAV VG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)