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AT1G30510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root FNR 2
Curator
Summary (TAIR10)
Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
Computational
Description (TAIR10)
root FNR 2 (RFNR2); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: root FNR 1 (TAIR:AT4G05390.1); Has 6645 Blast hits to 6645 proteins in 1680 species: Archae - 12; Bacteria - 3566; Metazoa - 779; Fungi - 733; Plants - 567; Viruses - 0; Other Eukaryotes - 988 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G30510EnsemblPlants:AT1G30510.1entrez:839930hmmpanther:PTHR19384hmmpanther:PTHR19384:SF54Pfam:PF00175Pfscan:PS51384
SUPFAM:SSF52343tair10-symbols:ATRFNR2tair10-symbols:RFNR2
Coordinates (TAIR10) chr1:-:10807150..10808984
Molecular Weight (calculated) 42663.60 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.60
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)