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AT1G29900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : carbamoyl phosphate synthetase B
Curator
Summary (TAIR10)
carbamoyl phosphate synthetase large chain (CARB) mRNA,
Computational
Description (TAIR10)
carbamoyl phosphate synthetase B (CARB); FUNCTIONS IN: catalytic activity, ATP binding; INVOLVED IN: cellular response to phosphate starvation, arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), MGS-like (InterPro:IPR011607), PreATP-grasp-like fold (InterPro:IPR016185), Carbamoyl phosphate synthetase, large subunit, oligomerisation (InterPro:IPR005480), Carbamoyl phosphate synthase, large subunit, glutamine-dependent (InterPro:IPR006275), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Carbamoyl phosphate synthase, large subunit (InterPro:IPR005483), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: acetyl-CoA carboxylase 2 (TAIR:AT1G36180.1); Has 49576 Blast hits to 29968 proteins in 5011 species: Archae - 665; Bacteria - 22536; Metazoa - 6475; Fungi - 1021; Plants - 476; Viruses - 0; Other Eukaryotes - 18403 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G29900-MONOMERBioGrid:25103EC:6.3.5.5eggNOG:COG0458eggNOG:KOG0370EMBL:AC008030EMBL:AF367268
EMBL:AY133548EMBL:CP002684EMBL:U40341EnsemblPlants:AT1G29900EnsemblPlants:AT1G29900.1entrez:839868Gene3D:1.10.1030.10
Gene3D:3.30.1490.20Gene3D:3.30.470.20Gene3D:3.40.50.1380Gene3D:3.40.50.20GeneID:839868Genevisible:Q42601GO:GO:0000050
GO:GO:0004087GO:GO:0004088GO:GO:0005524GO:GO:0005951GO:GO:0006526GO:GO:0009507GO:GO:0009570
GO:GO:0016020GO:GO:0016036GO:GO:0044205GO:GO:0046872Gramene:AT1G29900.1HAMAP:MF_01210_AHAMAP:MF_01210_B
hmmpanther:PTHR11405hmmpanther:PTHR11405:SF47HOGENOM:HOG000234582InParanoid:Q42601IntAct:Q42601InterPro:IPR005479InterPro:IPR005480
InterPro:IPR005483InterPro:IPR006275InterPro:IPR011607InterPro:IPR011761InterPro:IPR013815InterPro:IPR013816InterPro:IPR016185
iPTMnet:Q42601KEGG:00240+6.3.5.5KEGG:00250+6.3.5.5KEGG:ath:AT1G29900KO:K01955OMA:MPWSRFRPaxDb:Q42601
Pfam:PF02142Pfam:PF02786Pfam:PF02787Pfam:Q42601Pfscan:PS50975PhylomeDB:Q42601PIR:F86422
PRIDE:Q42601PRINTS:PR00098PRO:PR:Q42601ProMEX:Q42601PROSITE:PS00866PROSITE:PS00867PROSITE:PS50975
ProteinModelPortal:Q42601Proteomes:UP000006548Reactome:R-ATH-500753Reactome:R-ATH-70635RefSeq:NP_564338.1scanprosite:PS00866scanprosite:PS00867
SMART:SM00851SMART:SM01096STRING:3702.AT1G29900.1SUPFAM:0034967SUPFAM:SSF48108SUPFAM:SSF52335SUPFAM:SSF52440
SUPFAM:SSF56059TAIR:AT1G29900tair10-symbols:CARBTIGRfam:TIGR01369TIGRFAMs:TIGR01369UniGene:At.10370UniPathway:UPA00068
UniPathway:UPA00070UniProt:Q42601
Coordinates (TAIR10) chr1:+:10468164..10471976
Molecular Weight (calculated) 129965.00 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.10
Length 1187 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)