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AT1G29880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.921
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycyl-tRNA synthetase / glycine--tRNA ligase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycyl-tRNA synthetase / glycine--tRNA ligase; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), S15/NS1, RNA-binding (InterPro:IPR009068), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), Anticodon-binding (InterPro:IPR004154), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT1G29870.1); Has 6392 Blast hits to 4464 proteins in 1181 species: Archae - 269; Bacteria - 3324; Metazoa - 242; Fungi - 171; Plants - 75; Viruses - 0; Other Eukaryotes - 2311 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G29880-MONOMERBioGrid:25101BRENDA:6.1.1.14EC:6.1.1.14eggNOG:COG0423eggNOG:KOG2298EMBL:AC008030
EMBL:AJ002062EMBL:AY050895EMBL:AY086930EMBL:CP002684EnsemblPlants:AT1G29880EnsemblPlants:AT1G29880.1entrez:839866
Gene3D:1.10.287.10Gene3D:3.40.50.800GeneID:839866Genevisible:O23627GO:GO:0004820GO:GO:0005524GO:GO:0005739
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0005829GO:GO:0006426GO:GO:0015966GO:GO:0046686
GO:GO:0046983gramene_pathway:6.1.1.14gramene_pathway:TRNA-CHARGING-PWYhmmpanther:PTHR10745hmmpanther:PTHR10745:SF6HOGENOM:HOG000242015InParanoid:O23627
InterPro:IPR000738InterPro:IPR002314InterPro:IPR002315InterPro:IPR004154InterPro:IPR006195InterPro:IPR009068InterPro:IPR027031
KEGG:ath:AT1G29880KO:K01880ncoils:CoilOMA:IEFRKRVPANTHER:PTHR10745PaxDb:O23627Pfam:O23627
Pfam:PF00458Pfam:PF00587Pfam:PF03129Pfscan:PS50862Pfscan:PS51185PhylomeDB:O23627PIR:D86422
PRIDE:O23627PRINTS:PR01043PRO:PR:O23627PROSITE:PS00762PROSITE:PS50862PROSITE:PS51185ProteinModelPortal:O23627
Proteomes:UP000006548RefSeq:NP_564337.1scanprosite:PS00762SMART:SM00991SMR:O23627STRING:3702.AT1G29880.1SUPFAM:SSF47060
SUPFAM:SSF52954SUPFAM:SSF55681SwissPalm:O23627TAIR:AT1G29880TIGRfam:TIGR00389TIGRFAMs:TIGR00389UniGene:At.73
UniProt:O23627
Coordinates (TAIR10) chr1:-:10459662..10462781
Molecular Weight (calculated) 81948.20 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.31
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIFSTFVFH RRQQIFNLRQ FQTTTILRNP ISIAPIQIPM DATEQSLRQS LSEKSSSVEA QGNAVRALKA SRAAKPEIDA AIEQLNKLKL EKSTVEKELQ
101: SIISSSGNGS LNREAFRKAV VNTLERRLFY IPSFKIYSGV AGLFDYGPPG CAIKSNVLSF WRQHFILEEN MLEVDCPCVT PEVVLKASGH VDKFTDLMVK
201: DEKTGTCYRA DHLLKDYCTE KLEKDLTISA EKAAELKDVL AVMEDFSPEQ LGAKIREYGI TAPDTKNPLS DPYPFNLMFQ TSIGPSGLIP GYMRPETAQG
301: IFVNFKDLYY YNGKKLPFAA AQIGQAFRNE ISPRQGLLRV REFTLAEIEH FVDPENKSHP KFSDVAKLEF LMFPREEQMS GQSAKKLCLG EAVAKGTVNN
401: ETLGYFIGRV YLFLTRLGID KERLRFRQHL ANEMAHYAAD CWDAEIESSY GWIECVGIAD RSAYDLRAHS DKSGTPLVAE EKFAEPKEVE KLVITPVKKE
501: LGLAFKGNQK NVVESLEAMN EEEAMEMKAT LESKGEVEFY VCTLKKSVNI KKNMVSISKE KKKEHQRVFT PSVIEPSFGI GRIIYCLYEH CFSTRPSKAG
601: DEQLNLFRFP PLVAPIKCTV FPLVQNQQFE EVAKVISKEL ASVGISHKID ITGTSIGKRY ARTDELGVPF AITVDSDTSV TIRERDSKDQ VRVTLKEAAS
701: VVSSVSEGKM TWQDVWATFP HHSSAAADE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)