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AT1G27510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3506)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT4G33630.2); Has 287 Blast hits to 280 proteins in 95 species: Archae - 0; Bacteria - 15; Metazoa - 66; Fungi - 43; Plants - 121; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIKPeggNOG:ENOG410ZHAFEMBL:AC005916EMBL:AY045812EMBL:AY114085EMBL:CP002684EnsemblPlants:AT1G27510
EnsemblPlants:AT1G27510.1entrez:839642GeneID:839642Genevisible:Q94AT5GO:GO:0009507GO:GO:0010343GO:GO:0042651
Gramene:AT1G27510.1hmmpanther:PTHR33917hmmpanther:PTHR33917:SF2HOGENOM:HOG000237424InterPro:IPR001943InterPro:IPR021894KEGG:ath:AT1G27510
ncoils:CoilOMA:WWVGYSKPaxDb:Q94AT5Pfam:PF02151Pfam:PF12014Pfam:Q94AT5PhylomeDB:Q94AT5
PIR:B86400PRIDE:Q94AT5PRO:PR:Q94AT5ProteinModelPortal:Q94AT5Proteomes:UP000006548RefSeq:NP_564287.1STRING:3702.AT1G27510.1
TAIR:AT1G27510UniGene:At.23420UniProt:Q94AT5
Coordinates (TAIR10) chr1:-:9554945..9558293
Molecular Weight (calculated) 72134.80 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.43
Length 651 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTQPCLIG QIIAVPQFHI LFSPRNSLKP ELSTNKRTNF SVSIGLRHSF ASSISTCNPK APSLSCLRNC AAVDGADTSS SEDKWDWDWD RWNRHFSEIE
101: EVESVVSLLK SQLEDAVEKE DFEEAVKLKQ AISEATVDDA VAEIMRQLQT AVNEERYHDA SRLCNETGSG LVGWWVGLPR DSEEPFGRIV HITPGVGRFI
201: GKSYSPRQLV AEAAGTPLFE IFVIKDTDGG YVMQVVYVQH VKQNLTISEN SFSKVQQSSK SSINDPSILD VRGSELKVDK KEDTQLNAGE PTEEGIKNVI
301: KFLKDKIPGL KLKVMDVIKI PEEEIVGSDD ATEELVGEGT EETNSSDDEE EVEEEENDSI EAISSMDSAD YGKHSNTKLV IGGVLHNIED SSIDDEIVRV
401: SANIMDTERD SFILHVPGRS KRDIDTRKNR VSKEQVTALA AQGLSDLLPP EVAEAFWGEK ASLKVSKHVH EIVKLAINQA QKGNHLSEYT AFNRIITPES
501: NLDPFDGLYV GAFGPYGTEI VQLKRKYGRW DDAEGSNSSD IEFFEYVEAV KLTGDPNVPA GQVTFRARIG NGSRMTNHGL FPEELGVLAS YRGQGKIADF
601: GFKKPRWVEG KLLKLNGKGM GPYVKGADLG FLYIGPEQSF LVLFNRLRLP E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)