suba logo
AT1G11930.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7110 Blast hits to 7110 proteins in 2384 species: Archae - 21; Bacteria - 4266; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2502 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0325eggNOG:KOG3157EMBL:AF428291EMBL:AY116962EMBL:CP002684EnsemblPlants:AT1G11930EnsemblPlants:AT1G11930.1
entrez:837744ExpressionAtlas:Q944L8Gene3D:3.20.20.10GeneID:837744Gramene:AT1G11930.1hmmpanther:PTHR10146hmmpanther:PTHR10146:SF6
HOGENOM:HOG000048983InterPro:IPR001608InterPro:IPR011078InterPro:IPR029066KEGG:00473+5.1.1.1KEGG:ath:AT1G11930KO:K06997
OMA:RIQSNKVPANTHER:PTHR10146Pfam:PF01168PhylomeDB:Q944L8PIRSF:PIRSF004848PROSITE:PS01211Proteomes:UP000006548
RefSeq:NP_563897.1scanprosite:PS01211SMR:Q944L8STRING:3702.AT1G11930.1SUPFAM:SSF51419TAIR:AT1G11930TIGRfam:TIGR00044
TIGRFAMs:TIGR00044UniGene:At.21268unipathway:UPA00042UniProt:Q944L8
Coordinates (TAIR10) chr1:+:4028783..4030298
Molecular Weight (calculated) 28009.40 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.27
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MNEEEPDKEH VADSTMSAAA IDGVAALRSV FQRVNQAAEK AGRGSDQIRV VAVSKTKPVS LIRQVYDAGQ RSFGENYVQE IIEKAPQLPE DIEWHFIGNL
101: QSNKVKPLLS GVPNLVTVES VDDEKIANML DRVVGNIGRK PLKVFVQVNT SGEDSKFGVE PSGCVGLAKH VKEACSNLEF SGLMTIGMAD YTSTPENFKL
201: LAKCRSEVCK ELGIPEEQCE LSMGMSGDFE LALQIELGST NVRIGSTIFG AREYPKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)