suba logo
AT1G08550.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : non-photochemical quenching 1
Curator
Summary (TAIR10)
Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex
Computational
Description (TAIR10)
non-photochemical quenching 1 (NPQ1); FUNCTIONS IN: violaxanthin de-epoxidase activity; INVOLVED IN: fatty acid metabolic process, response to heat, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast photosystem II, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Violaxanthin de-epoxidase (InterPro:IPR010788), Calycin-like (InterPro:IPR011038); BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1); Has 258 Blast hits to 254 proteins in 55 species: Archae - 0; Bacteria - 9; Metazoa - 2; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G08550-MONOMERBioCyc:ARA:GQT-2385-MONOMERBioCyc:MetaCyc:AT1G08550-MONOMERBioGrid:22618BRENDA:1.10.99.3EC:1.23.5.1eggNOG:ENOG410IG0U
eggNOG:ENOG410XRAIEMBL:AC003981EMBL:AC006932EMBL:AF370251EMBL:AY063067EMBL:CP002684EMBL:U44133
EnsemblPlants:AT1G08550EnsemblPlants:AT1G08550.1EnsemblPlants:AT1G08550.2entrez:837377EvolutionaryTrace:Q39249ExpressionAtlas:Q39249Gene3D:2.40.128.20
GeneID:837377Genevisible:Q39249GO:GO:0006631GO:GO:0009408GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0010028GO:GO:0015994GO:GO:0031977GO:GO:0046422Gramene:AT1G08550.1Gramene:AT1G08550.2gramene_plant_reactome:1119449
gramene_plant_reactome:6875119hmmpanther:PTHR33970hmmpanther:PTHR33970:SF1HOGENOM:HOG000265603InParanoid:Q39249IntAct:Q39249InterPro:IPR010788
InterPro:IPR011038InterPro:IPR012674InterPro:IPR022272iPTMnet:Q39249KEGG:ath:AT1G08550KO:K09839ncoils:Coil
OMA:DFNGKWYPaxDb:Q39249PDB:3CQNPDB:3CQRPDBsum:3CQNPDBsum:3CQRPfam:PF07137
Pfam:Q39249PhylomeDB:Q39249PIR:T00708PRIDE:Q39249PRO:PR:Q39249PROSITE:PS00213ProteinModelPortal:Q39249
Proteomes:UP000006548RefSeq:NP_001031000.1RefSeq:NP_172331.1scanprosite:PS00213SMR:Q39249STRING:3702.AT1G08550.1SUPFAM:SSF50814
TAIR:AT1G08550tair10-symbols:AVDE1tair10-symbols:NPQ1UniGene:At.20930UniProt:B9DGR5UniProt:Q39249
Coordinates (TAIR10) chr1:+:2707462..2709387
Molecular Weight (calculated) 52019.90 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.32
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVATHCFTS PCHDRIRFFS SDDGIGRLGI TRKRINGTFL LKILPPIQSA DLRTTGGRSS RPLSAFRSGF SKGIFDIVPL PSKNELKELT APLLLKLVGV
101: LACAFLIVPS ADAVDALKTC ACLLKGCRIE LAKCIANPAC AANVACLQTC NNRPDETECQ IKCGDLFENS VVDEFNECAV SRKKCVPRKS DLGEFPAPDP
201: SVLVQNFNIS DFNGKWYITS GLNPTFDAFD CQLHEFHTEG DNKLVGNISW RIKTLDSGFF TRSAVQKFVQ DPNQPGVLYN HDNEYLHYQD DWYILSSKIE
301: NKPEDYIFVY YRGRNDAWDG YGGAVVYTRS SVLPNSIIPE LEKAAKSIGR DFSTFIRTDN TCGPEPALVE RIEKTVEEGE RIIVKEVEEI EEEVEKEVEK
401: VGRTEMTLFQ RLAEGFNELK QDEENFVREL SKEEMEFLDE IKMEASEVEK LFGKALPIRK VR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)