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AT1G06230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : global transcription factor group E4
Curator
Summary (TAIR10)
This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.
Computational
Description (TAIR10)
global transcription factor group E4 (GTE4); CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 9656 Blast hits to 6188 proteins in 362 species: Archae - 8; Bacteria - 274; Metazoa - 4793; Fungi - 1365; Plants - 669; Viruses - 49; Other Eukaryotes - 2498 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5076eggNOG:KOG1474EMBL:AC025290EMBL:CP002684EnsemblPlants:AT1G06230EnsemblPlants:AT1G06230.1EnsemblPlants:AT1G06230.2
EnsemblPlants:AT1G06230.3entrez:837133Gene3D:1.20.920.10GeneID:837133Genevisible:Q9LNC4GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009294GO:GO:0045931GO:GO:0048364Gramene:AT1G06230.1Gramene:AT1G06230.2Gramene:AT1G06230.3
hmmpanther:PTHR22880hmmpanther:PTHR22880:SF172HOGENOM:HOG000153054InParanoid:Q9LNC4InterPro:IPR001487InterPro:IPR027353iPTMnet:Q9LNC4
KEGG:ath:AT1G06230ncoils:CoilOMA:YNREMRFPaxDb:Q9LNC4Pfam:PF00439Pfam:PF17035Pfam:Q9LNC4
Pfscan:PS50014Pfscan:PS51525PhylomeDB:Q9LNC4PIR:A86198PRIDE:Q9LNC4PRINTS:PR00503PRO:PR:Q9LNC4
PROSITE:PS50014PROSITE:PS51525ProteinModelPortal:Q9LNC4Proteomes:UP000006548RefSeq:NP_001184922.1RefSeq:NP_172113.1RefSeq:NP_849601.1
SMART:SM00297SMR:Q9LNC4STRING:3702.AT1G06230.1SUPFAM:SSF47370TAIR:AT1G06230tair10-symbols:GTE4UniGene:At.15477
UniProt:Q9LNC4
Coordinates (TAIR10) chr1:+:1907626..1910183
Molecular Weight (calculated) 84099.10 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.77
Length 766 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEPVNGGE GIDGAREKQI IKVYKRKGKG QRKQSSFFAL EAAIEKPEGL LENENDNNDV SPAETLAPEF EDPIVVVKNS IEEAALGTNS HGDKNLTEAP
101: SENLPGDDSD KVIDKPLVEA FSQAQPQDDA SLAAMDKSEE VPSQIPKAQD DVNTVVVDEN SIKEPPKSLA QEDVTTVIVD KNPIEAPSQT LSLEDGDTLV
201: VDKNPIEVSS EEDVHVIDAD NLIKEAHPEN FVERDTTDAQ QPAGLTSDSA HATAAGSMPM EEDADGRIRI HVASTTKQQK EEIRKKLEDQ LNVVRGMVKK
301: IEDKEGEIGA YNDSRVLINT GINNGGGRIL SGFASAGLPR EVIRAPRPVN QLSISVLENT QGVNEHVEKE KRTPKANQFY RNSEFLLGDK LPPAESNKKS
401: KSSSKKQGGD VGHGFGAGTK VFKNCSALLE RLMKHKHGWV FNAPVDVKGL GLLDYYTIIE HPMDLGTIKS ALMKNLYKSP REFAEDVRLT FHNAMTYNPE
501: GQDVHLMAVT LLQIFEERWA VIEADYNREM RFVTGYEMNL PTPTMRSRLG PTMPPPPINV RNTIDRADWS NRQPTTTPGR TPTSATPSGR TPALKKPKAN
601: EPNKRDMTYE EKQKLSGHLQ NLPPDKLDAI VQIVNKRNTA VKLRDEEIEV DIDSVDPETL WELDRFVTNY KKGLSKKKRK AELAIQARAE AERNSQQQMA
701: PAPAAHEFSR EGGNTAKKTL PTPLPSQVEK QNNETSRSSS SSSSSSSSSS SDSDSDSSSS SGSDQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)