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AT1G03680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin M-type 1
Curator
Summary (TAIR10)
encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.
Computational
Description (TAIR10)
thioredoxin M-type 1 (THM1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G03520.1); Has 21675 Blast hits to 20380 proteins in 3008 species: Archae - 297; Bacteria - 11532; Metazoa - 2886; Fungi - 1120; Plants - 1860; Viruses - 8; Other Eukaryotes - 3972 (source: NCBI BLink).
Protein Annotations
BioGrid:24671eggNOG:COG0526eggNOG:KOG0910EMBL:AC002560EMBL:AF095749EMBL:BT004295EMBL:BT005525
EMBL:CP002684EnsemblPlants:AT1G03680EnsemblPlants:AT1G03680.1entrez:839436Gene3D:3.40.30.10GeneID:839436Genevisible:O48737
GO:GO:0000103GO:GO:0004857GO:GO:0006109GO:GO:0006457GO:GO:0006662GO:GO:0008047GO:GO:0009409
GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009941GO:GO:0010319GO:GO:0015035GO:GO:0016671
GO:GO:0034599GO:GO:0043085GO:GO:0043086GO:GO:0045454GO:GO:0048046GO:GO:0055114Gramene:AT1G03680.1
hmmpanther:PTHR10438hmmpanther:PTHR10438:SF300HOGENOM:HOG000292977InParanoid:O48737IntAct:O48737InterPro:IPR005746InterPro:IPR012336
InterPro:IPR013766InterPro:IPR017937KEGG:ath:AT1G03680KO:K03671OMA:SEMRIASPANTHER:PTHR10438PaxDb:O48737
Pfam:O48737Pfam:PF00085Pfscan:PS51352PhylomeDB:O48737PIR:T00893PRIDE:O48737PRO:PR:O48737
PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:O48737Proteomes:UP000006548Reactome:R-ATH-3299685RefSeq:NP_849585.1scanprosite:PS00194
SMR:O48737STRING:3702.AT1G03680.1SUPFAM:SSF52833TAIR:AT1G03680tair10-symbols:ATHM1tair10-symbols:ATM1tair10-symbols:THM1
tair10-symbols:TRX-M1TIGRfam:TIGR01068TIGRFAMs:TIGR01068UniGene:At.20253UniProt:O48737
Coordinates (TAIR10) chr1:-:916990..917865
Molecular Weight (calculated) 19665.60 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.13
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)