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AT1G02910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.
Computational
Description (TAIR10)
LOW PSII ACCUMULATION1 (LPA1); FUNCTIONS IN: binding; INVOLVED IN: photosystem II oxygen evolving complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1); Has 201 Blast hits to 200 proteins in 49 species: Archae - 3; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:24585eggNOG:ENOG410IJWBeggNOG:ENOG410YYDPEMBL:AC009525EMBL:CP002684EnsemblPlants:AT1G02910EnsemblPlants:AT1G02910.1
entrez:839350Gene3D:1.25.40.10GeneID:839350Genevisible:Q9SRY4GO:GO:0009507GO:GO:0009535GO:GO:0010270
GO:GO:0016021Gramene:AT1G02910.1hmmpanther:PTHR17130hmmpanther:PTHR17130:SF20HOGENOM:HOG000006163InParanoid:Q9SRY4InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734InterPro:IPR021883KEGG:ath:AT1G02910OMA:REYNLKFPaxDb:Q9SRY4Pfam:PF11998
Pfam:PF13414Pfam:Q9SRY4Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9SRY4PIR:E86159PRIDE:Q9SRY4
PRO:PR:Q9SRY4PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q9SRY4Proteomes:UP000006548RefSeq:NP_171790.1SMR:Q9SRY4
STRING:3702.AT1G02910.1SUPFAM:SSF48452TAIR:AT1G02910tair10-symbols:LPA1TMHMM:TMhelixUniGene:At.42573UniProt:Q9SRY4
Coordinates (TAIR10) chr1:-:655749..658125
Molecular Weight (calculated) 50741.90 Da
IEP (calculated) 9.83
GRAVY (calculated) -0.35
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVATAPSLN RHFPRRISNL YSRVKQRRPW LPPGDATLFN SRRNWDSHLF VYASSSSSPS SSPPSPNSPT DDLTAELCVN TGLDLFKRGR VKDALVQFET
101: ALSLAPNPIE SQAAYYNKAC CHAYRGEGKK AVDCLRIALR DYNLKFATIL NDPDLASFRA LPEFKELQEE ARLGGEDIGD NFRRDLKLIS EVRAPFRGVR
201: KFFYFAFAAA AGISMFFTVP RLVQAIRGGD GAPNLLETTG NAAINIGGIV VMVSLFLWEN KKEEEQMVQI TRDETLSRLP LRLSTNRVVE LVQLRDTVRP
301: VILAGKKETV TLAMQKADRF RTELLRRGVL LVPVVWGERK TPEIEKKGFG ASSKAATSLP SIGEDFDTRA QSVVAQSKLK GEIRFKAETV SPGEWERWIR
401: DQQISEGVNP GDDVYIILRL DGRVRRSGRG MPDWAEISKE LPPMDDVLSK LER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)