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AT1G02150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G02820.1); Has 10811 Blast hits to 5678 proteins in 200 species: Archae - 0; Bacteria - 11; Metazoa - 28; Fungi - 100; Plants - 10424; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).
Protein Annotations
BioGrid:24812eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC064879EMBL:AY094410EMBL:BT005812EMBL:CP002684
EMBL:U89959EnsemblPlants:AT1G02150EnsemblPlants:AT1G02150.1entrez:839577Gene3D:1.25.40.10GeneID:839577Genevisible:Q8LPS6
GO:GO:0009507Gramene:AT1G02150.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF27HOGENOM:HOG000240938InParanoid:Q8LPS6InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G02150OMA:PLPFNVMPaxDb:Q8LPS6Pfam:PF01535Pfam:PF13812Pfam:Q8LPS6
Pfscan:PS51375PhylomeDB:Q8LPS6PRIDE:Q8LPS6PRO:PR:Q8LPS6PROSITE:PS51375ProteinModelPortal:Q8LPS6Proteomes:UP000006548
RefSeq:NP_171717.2SMR:Q8LPS6STRING:3702.AT1G02150.1SUPFAM:SSF48452TAIR:AT1G02150TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.28171UniGene:At.71188UniProt:Q8LPS6
Coordinates (TAIR10) chr1:+:408779..410433
Molecular Weight (calculated) 59886.10 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.33
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)