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AT1G01620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21413151 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plasma membrane intrinsic protein 1C
Curator
Summary (TAIR10)
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.
Computational
Description (TAIR10)
plasma membrane intrinsic protein 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10781 Blast hits to 10762 proteins in 2222 species: Archae - 88; Bacteria - 5165; Metazoa - 1470; Fungi - 448; Plants - 2514; Viruses - 2; Other Eukaryotes - 1094 (source: NCBI BLink).
Protein Annotations
BioGrid:24471eggNOG:COG0580eggNOG:KOG0223EMBL:AC061957EMBL:AF348574EMBL:AY062610EMBL:BT002101
EMBL:CP002684EMBL:X69294EMBL:X75882EnsemblPlants:AT1G01620EnsemblPlants:AT1G01620.1entrez:839235ExpressionAtlas:Q08733
Gene3D:1.20.1080.10GeneID:839235Genevisible:Q08733GO:GO:0005773GO:GO:0005886GO:GO:0006833GO:GO:0009414
GO:GO:0009506GO:GO:0009507GO:GO:0015250GO:GO:0015254GO:GO:0015793GO:GO:0016020GO:GO:0016021
GO:GO:0034220hmmpanther:PTHR19139hmmpanther:PTHR19139:SF169HOGENOM:HOG000288286InParanoid:Q08733IntAct:Q08733InterPro:IPR000425
InterPro:IPR022357InterPro:IPR023271OMA:IHARVEMPANTHER:PTHR19139PaxDb:Q08733Pfam:PF00230Pfam:Q08733
PhylomeDB:Q08733PIR:A86147PRIDE:Q08733PRINTS:PR00783PRO:PR:Q08733PROSITE:PS00221ProteinModelPortal:Q08733
Proteomes:UP000006548Reactome:R-ATH-432047RefSeq:NP_171668.1scanprosite:PS00221SMR:Q08733STRING:3702.AT1G01620.1SUPFAM:SSF81338
TAIR:AT1G01620tair10-symbols:PIP1;3tair10-symbols:PIP1Ctair10-symbols:TMP-BTIGRfam:TIGR00861TIGRFAMs:TIGR00861TMHMM:TMhelix
UniGene:At.20892UniGene:At.24062UniGene:At.74765UniProt:Q08733
Coordinates (TAIR10) chr1:-:225986..227176
Molecular Weight (calculated) 30634.30 Da
IEP (calculated) 9.08
GRAVY (calculated) 0.38
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)