AT3G56000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.634 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose synthase like A14 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a gene similar to cellulose synthase | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase like A14 (CSLA14); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A3 (TAIR:AT1G23480.2); Has 4532 Blast hits to 4528 proteins in 1325 species: Archae - 200; Bacteria - 3460; Metazoa - 7; Fungi - 93; Plants - 478; Viruses - 11; Other Eukaryotes - 283 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20783462..20785684 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61486.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLSDGLFD DMSVLGVIGY VLEQTRFIFL VPILKRLVNL CQVVSVLLFV DAAYMAIVVA IVKLLGRTPQ KVLKWESFKS DDIELAPSSN HPMVLIQIPI 101: FNEKEVCQLS IGAACKLSWP LDRMIIQVLD DSTEEESQKL VRLECKKWES EGITIKSEVR GGFREGFKAG ALTAGMKHSY VDEYKCEFVV IFDADFQPEP 201: DFLERTVPFL VHNPEIALVQ AGWKYGNADE CCMTRIQEMS LNYHFAVEQK SGSSILGFFG FNGTAGVWRI KALNEAEGWK DRTIVEDMDL AVRAYLRGSK 301: FVYVDDVKVK NELPSSFQAY RFQQHRWSCG PANLFKKIAM EIIKNQNVSL WKKVYLIYNF FFLRKIVVHI FTFVFYCVIL PATVIFPEIE VPKWTTIYIP 401: ATITILNAIA TPKSFYLILY WILFENVMAM HRSIGTLIGL LETSRVKEWI VTQKLGESNN LRENLIFPDH YSFPERLRWR EIMVGMYLFI CGYYDFVFGR 501: TYLYVYLFLQ SIAFFVVGVG YVGMPVPSTP VQTSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)