AT3G44630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.564 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 41227 Blast hits to 23573 proteins in 843 species: Archae - 26; Bacteria - 2454; Metazoa - 3797; Fungi - 287; Plants - 32967; Viruses - 4; Other Eukaryotes - 1692 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16196292..16200423 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 138985.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1214 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGSAMSLSCS KRKATSQDVD SESCKRRKTC STNDAENCIF IPDESSWSLC ANRVITVAAV ALTNFRFQQD NQESNSSSLS LPSLATSVSR NWKHDVFPSF 0101: HGADVRRTFL SHIMESFRRK GIDTFIDNNI ERSKSIGPEL KEAIKGSKIA IVLLSRKYAS SSWCLDELAE IMKCRQMVGQ IVMTIFYEVE PTDIKKQTGE 0201: FGKAFTKTCR GKPKEQVERW RKALEDVATI AGYHSHSWRN EADMIEKIAT DVSNMLNSFT PSRDFDGLVG MRAHMDMLEQ LLRLDLDEVR IIGIWGPPGI 0301: GKTTIARFLL NQVSDRFQLS AIMVNIKGCY PRPCFDEYSA QLQLQNQMLS QMINHKDIMI SHLGVAQERL RDKKVFLVLD EVDQLGQLDA LAKETRWFGP 0401: GSRIIITTED LGVLKAHGIN HVYKVEYPSN DEAFQIFCMN AFGQKQPHEG FDEIAWEVKA LAGKLPLGLK VLGSALRGKS KPEWERTLPR LRTSLDGKIG 0501: GIIQFSYDAL CDEDKYLFLY IACLFNGEST TKVKELLGKF LDVRQGLHVL AQKSLISFDE EISWKQIVQV LLLNKFSHVR HTKRNKSQII RMHTLLEQFG 0601: RETSRKQFVH HRYTKHQLLV GERDICEVLD DDTTDNRRFI GINLDLYKNE EELNISEKAL ERIHDFQFVK INYVFTHQPE RVQLALEDLI YHSPRIRSLK 0701: WFPYQNICLP STFNPEFLVE LDMRCSKLRK LWEGTKQLRN LKWMDLSDSR DLKELPSSIE KLTSLQILDL RDCSSLVKLP PSINANNLQG LSLTNCSRVV 0801: KLPAIENVTN LHQLKLQNCS SLIELPLSIG TANNLWKLDI RGCSSLVKLP SSIGDMTNLK EFDLSNCSNL VELPSSIGNL QKLFMLRMRG CSKLETLPTN 0901: INLISLRILD LTDCSQLKSF PEISTHISEL RLKGTAIKEV PLSITSWSRL AVYEMSYFES LKEFPHALDI ITDLLLVSED IQEVPPWVKR MSRLRALRLN 1001: NCNSLVSLPQ LPDSLDYIYA DNCKSLERLD CCFNNPEIRL YFPKCFKLNQ EARDLIMHTS TRKYAMLPSI QVPACFNHRA TSGDYLKIKL KESSLPTTLR 1101: FKACIMLVKV NEEMRDDEMW PSVLIAIRVK QNDLKVLCTA SIYPVLTEHI YTFELEVEEV TSTELVFEFT PFHKSNWKIG ECGILQRETR SFCRSSSPDL 1201: PPESSRVFLA RTTV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)