AT3G27180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4717 Blast hits to 4707 proteins in 1568 species: Archae - 39; Bacteria - 4296; Metazoa - 92; Fungi - 26; Plants - 68; Viruses - 1; Other Eukaryotes - 195 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10027163..10030062 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57848.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 518 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNSSSLFSF GGRFPIINCR VSAPASAPFV ASVPLPPSTS SDSLACSLQC PHFQSCSGCT QEFNLHRPAV VDEASDFFKR YGVDDFTFDS CRLWGWRCRA 101: KLAVRGSSDN ALIGLYQEGT HTVVDIPECK SHHPNINAAI ELLREGIKVF DVVPFDEDQG TGDLRYVQMA VTTHSTNLRA PERYKNGKVQ VSLVWNSRNE 201: RSHNADKLQA LSTYLWRKGG PNSKFHLIHS VWANFQTSTN NIIFGNRWRH LLGERDFWEH VGGIDISLDP SSFGQANTRA FDSLLWKLHK YVPGGSSVAD 301: LYAGAGVIGL SLATSRKCSS VKCIEVNKEA RLSFEKTIQR LPNSLNCSIS WHHADASVNP LSWIIGSDVV VVDPPRRGLD ASLRQMLESV PSIEKRMRSS 401: SQSSSLNAKE EKRPWILRAK ELSIQAGNKQ TSEENNTLPQ RLIYISCGWE SFKEDCKSLL SSRAWELEKA HGFNFFPGTD SIEVLAVFKR RVASKKKKKS 501: GIKKVGIKKV RAKSQDSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)