AT3G20320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : trigalactosyldiacylglycerol2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
trigalactosyldiacylglycerol2 (TGD2); FUNCTIONS IN: phospholipid binding, lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mammalian cell entry related (InterPro:IPR003399); Has 660 Blast hits to 610 proteins in 215 species: Archae - 0; Bacteria - 436; Metazoa - 0; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7087657..7089640 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41632.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 381 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIGNPVIQVP SSLMPSSSMI ACPRVSPNGV PYLPPKPRTR HLVVRAASNS DAAHGQPSSD GGKNPLTVVL DVPRNIWRQT LKPLSDFGFG KRSIWEGGVG 101: LFIVSGATLL ALSWAWLRGF QMRSKFRKYQ TVFELSHASG ICTGTPVRIR GVTVGTIIRV NPSLKNIEAV AEIEDDKIII PRNSLVEVNQ SGLLMETMID 201: IMPRNPIPEP SVGPLHPECG KEGLIVCDRQ TIKGVQGVSL DELVGIFTRI GREVEAIGVA NTYSLAERAA SVIEEARPLL KKIQAMAEDA QPLLSEFRDS 301: GLLKEVECLT RSLTQASDDL RKVNSSIMTP ENTELIQKSI YTLVYTLKNV ESISSDILGF TGDEATRKNL KLLIKSLSRL L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)